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human37.html
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human37.html
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---
layout: genome
---
<script language="javascript">
var b = new Browser({
chr: '22',
viewStart: 30700000,
viewEnd: 30900000,
cookieKey: 'human-grc_h37',
coordSystem: {
speciesName: 'Human',
taxon: 9606,
auth: 'GRCh',
version: '37',
ucscName: 'hg19'
},
chains: {
hg18ToHg19: {
uri: '//www.biodalliance.org/datasets/hg18ToHg19.bb',
type: 'bigbed',
coords: {
speciesName: 'Human',
taxon: 9606,
auth: 'NBCI',
version: 36,
ucscName: 'hg17'
}
}
},
sources: [{name: 'Genome',
twoBitURI: '//www.biodalliance.org/datasets/hg19.2bit',
tier_type: 'sequence'},
{name: 'Genes',
desc: 'Gene structures from GENCODE 19',
bwgURI: '//www.biodalliance.org/datasets/gencode.bb',
stylesheet_uri: '//www.biodalliance.org/stylesheets/gencode.xml',
collapseSuperGroups: true,
trixURI: '//www.biodalliance.org/datasets/geneIndex.ix'},
{name: 'Repeats',
desc: 'Repeat annotation from Ensembl 59',
bwgURI: '//www.biodalliance.org/datasets/repeats.bb',
stylesheet_uri: '//www.biodalliance.org/stylesheets/bb-repeats.xml'}
,{name: 'Conservation',
desc: 'Conservation',
bwgURI: '//www.biodalliance.org/datasets/phastCons46way.bw',
noDownsample: true}
,{name: 'GM12878 ChromHMM', desc: 'GM12878 ChromHMM Genome Segmentation',
pennant: '//genome.ucsc.edu/images/encodeThumbnail.jpg',
bwgURI: 'http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/byDataType/segmentations/jan2011/hub/gm12878.ChromHMM.bb',
style: [{type: 'bigbed', style: {glyph: 'BOX', FGCOLOR: 'black', BGCOLOR: 'blue', HEIGHT: 8, BUMP: false, LABEL: false, ZINDEX: 20, BGITEM: true, id: 'style1'}},
{type: 'bb-translation', style: {glyph: 'BOX', FGCOLOR: 'black', BGITEM: true, BGCOLOR: 'red', HEIGHT: 10, BUMP: true, ZINDEX: 20, id: 'style2'}},
{type: 'bb-transcript', style: {glyph: 'BOX', FGCOLOR: 'black', BGCOLOR: 'white', HEIGHT: 10, ZINDEX: 10, BUMP: true, LABEL: true, id: 'style3'}}]}
],
prefix: '{{site.uiprefix}}/',
fullScreen: true,
hubs: ['http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt', 'http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt'],
});
</script>
<div id='svgHolder'>Dalliance goes here...</div>