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"https://bioarchive.galaxyproject.org/zebrafishRNASeq_1.20.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-zebrafishrnaseq/bioconductor-zebrafishrnaseq_1.20.0_src_all.tar.gz"], "md5": "06390452c93fde30918ee5c5a3f6e5f2", "fn": "zebrafishRNASeq_1.20.0.tar.gz"}, "biscuiteerdata-1.14.1": {"urls": ["https://bioconductor.org/packages/3.17/data/experiment/src/contrib/biscuiteerData_1.14.1.tar.gz", "https://bioarchive.galaxyproject.org/biscuiteerData_1.14.1.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-biscuiteerdata/bioconductor-biscuiteerdata_1.14.1_src_all.tar.gz"], "md5": "143bedc239cf56a25dc8bf6c1e98d392", "fn": "biscuiteerData_1.14.1.tar.gz"}, "spatialdmelxsim-1.6.1": {"urls": ["https://bioconductor.org/packages/3.17/data/experiment/src/contrib/spatialDmelxsim_1.6.1.tar.gz", "https://bioarchive.galaxyproject.org/spatialDmelxsim_1.6.1.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-spatialdmelxsim/bioconductor-spatialdmelxsim_1.6.1_src_all.tar.gz"], "md5": "8f999976552a56f39d49fd9ee186b017", "fn": "spatialDmelxsim_1.6.1.tar.gz"}, "mcseadata-1.20.1": {"urls": ["https://bioconductor.org/packages/3.17/data/experiment/src/contrib/mCSEAdata_1.20.1.tar.gz", "https://bioarchive.galaxyproject.org/mCSEAdata_1.20.1.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-mcseadata/bioconductor-mcseadata_1.20.1_src_all.tar.gz"], "md5": "43b69165fffc6652fc2df2395bd0b8e6", "fn": "mCSEAdata_1.20.1.tar.gz"}} \ No newline at end of file diff --git a/recipes/bioconductor-data-packages/meta.yaml b/recipes/bioconductor-data-packages/meta.yaml index 6cd7b856ddec8..d5703e1b44557 100644 --- a/recipes/bioconductor-data-packages/meta.yaml +++ b/recipes/bioconductor-data-packages/meta.yaml @@ -1,6 +1,6 @@ package: name: 'bioconductor-data-packages' - version: '20230713' + version: '20230717' source: build: number: 0 diff --git a/recipes/bioconductor-mcseadata/meta.yaml b/recipes/bioconductor-mcseadata/meta.yaml index 6a2eda1880fe9..f8469dde6c5e9 100644 --- a/recipes/bioconductor-mcseadata/meta.yaml +++ b/recipes/bioconductor-mcseadata/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.20.0" %} +{% set version = "1.20.1" %} {% set name = "mCSEAdata" %} {% set bioc = "3.17" %} @@ -11,7 +11,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 44b91c410f01438e2d0d3946689207bd + md5: 43b69165fffc6652fc2df2395bd0b8e6 build: number: 0 rpaths: @@ -21,11 +21,13 @@ build: # Suggests: BiocStyle, knitr, rmarkdown requirements: host: + - 'bioconductor-genomicranges >=1.52.0,<1.53.0' - r-base run: + - 'bioconductor-genomicranges >=1.52.0,<1.53.0' - r-base - curl - - bioconductor-data-packages>=20230706 + - bioconductor-data-packages>=20230717 test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-mcseadata/post-link.sh b/recipes/bioconductor-mcseadata/post-link.sh index 3ba2603db8c65..2eeaf2308191f 100644 --- a/recipes/bioconductor-mcseadata/post-link.sh +++ b/recipes/bioconductor-mcseadata/post-link.sh @@ -1,2 +1,2 @@ #!/bin/bash -installBiocDataPackage.sh "mcseadata-1.20.0" +installBiocDataPackage.sh "mcseadata-1.20.1" diff --git a/recipes/bioconductor-wppi/meta.yaml b/recipes/bioconductor-wppi/meta.yaml index b7d945c10ae01..aab6679048a23 100644 --- a/recipes/bioconductor-wppi/meta.yaml +++ b/recipes/bioconductor-wppi/meta.yaml @@ -51,6 +51,7 @@ requirements: test: commands: - '$R -e "library(''{{ name }}'')"' + - find /tmp -name omnipathr-log -exec rm -rf {} + about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'MIT + file LICENSE'