diff --git a/build-fail-blacklist b/build-fail-blacklist index b981077a954b2..200bbb00bd936 100644 --- a/build-fail-blacklist +++ b/build-fail-blacklist @@ -1,3 +1,6 @@ +# Currently kills bulk +recipes/bioconductor-missmethyl + # Needs r-xgboost migration recipes/bioconductor-bambu recipes/bioconductor-bayesspace @@ -10,6 +13,7 @@ recipes/bioconductor-scate recipes/bioconductor-scdblfinder recipes/bioconductor-scds recipes/bioconductor-trena +recipes/bioconductor-flames # speed up bulk recipes/bioconductor-minfi diff --git a/recipes/bioconductor-data-packages/dataURLs.json b/recipes/bioconductor-data-packages/dataURLs.json index 541288b213fe8..c700b3d614bb4 100644 --- a/recipes/bioconductor-data-packages/dataURLs.json +++ b/recipes/bioconductor-data-packages/dataURLs.json @@ -1 +1 @@ -{"ritandata-1.20.0": {"urls": ["https://bioconductor.org/packages/3.15/data/experiment/src/contrib/RITANdata_1.20.0.tar.gz", "https://bioarchive.galaxyproject.org/RITANdata_1.20.0.tar.gz", 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newline at end of file diff --git a/recipes/bioconductor-data-packages/meta.yaml b/recipes/bioconductor-data-packages/meta.yaml index d5703e1b44557..2bfe07c4a5a73 100644 --- a/recipes/bioconductor-data-packages/meta.yaml +++ b/recipes/bioconductor-data-packages/meta.yaml @@ -3,7 +3,7 @@ package: version: '20230717' source: build: - number: 0 + number: 1 noarch: generic requirements: run: diff --git a/recipes/bioconductor-methylclockdata/meta.yaml b/recipes/bioconductor-methylclockdata/meta.yaml index bd3289a1299cb..0f81c2bd0f5c3 100644 --- a/recipes/bioconductor-methylclockdata/meta.yaml +++ b/recipes/bioconductor-methylclockdata/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} {% set name = "methylclockData" %} {% set bioc = "3.17" %} @@ -11,14 +11,14 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 52774d13964d22556fdceb4458caaa27 + md5: c211da6ed8d39ba8cee6d4d630691bad build: number: 0 rpaths: - lib/R/lib/ - lib/ noarch: generic -# Suggests: knitr, rmarkdown +# Suggests: knitr, BiocStyle, rmarkdown requirements: host: - 'bioconductor-experimenthub >=2.8.0,<2.9.0' @@ -29,7 +29,7 @@ requirements: - 'bioconductor-experimenthubdata >=1.26.0,<1.27.0' - r-base - curl - - bioconductor-data-packages>=20230706 + - bioconductor-data-packages>=20230717 test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-methylclockdata/post-link.sh b/recipes/bioconductor-methylclockdata/post-link.sh index 9f8fe965fcdd3..744cc5a5c07e4 100644 --- a/recipes/bioconductor-methylclockdata/post-link.sh +++ b/recipes/bioconductor-methylclockdata/post-link.sh @@ -1,2 +1,2 @@ #!/bin/bash -installBiocDataPackage.sh "methylclockdata-1.8.0" +installBiocDataPackage.sh "methylclockdata-1.8.1" diff --git a/recipes/bioconductor-wppi/meta.yaml b/recipes/bioconductor-wppi/meta.yaml index 9a7d34a4bbac6..7116847631e52 100644 --- a/recipes/bioconductor-wppi/meta.yaml +++ b/recipes/bioconductor-wppi/meta.yaml @@ -50,8 +50,7 @@ requirements: - r-tidyr test: commands: - - '$R -e "library(''{{ name }}'')"' - - find /tmp -name omnipathr-log -exec rm -rf {} + || true + - $R -e "options(omnipath.logfile=''none''); library(''{{ name }}'')" && find /tmp -name omnipathr-log -exec rm -rf {} + || true about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: 'MIT + file LICENSE' diff --git a/recipes/meryl/meta.yaml b/recipes/meryl/meta.yaml index 9bc19a372ea8c..b4dd88cdafa23 100644 --- a/recipes/meryl/meta.yaml +++ b/recipes/meryl/meta.yaml @@ -14,7 +14,7 @@ source: - 0002-macos-cmath.patch # [osx] build: - number: 0 + number: 1 requirements: build: