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Standardise code: imports and style #8

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eudesbarbosa opened this issue Jun 14, 2021 · 0 comments
Open

Standardise code: imports and style #8

eudesbarbosa opened this issue Jun 14, 2021 · 0 comments

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@eudesbarbosa
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Issue
Code written with mix of styles, for instance, Python code written with R style. Also, no automatic testing is included in CI.

Suggestion

  • Use isort to order Python imports (link).
  • Use black to standardize Python code style (link).
  • Use snakefmt to standardize Snakemake code style (link).
  • Find corresponding R automatic style check.
    ...add all tests to github CI.

Import: This issue can only be addressed after branch clean up is complete.
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@eudesbarbosa