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Slow conda installation #3

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eudesbarbosa opened this issue May 31, 2021 · 1 comment
Open

Slow conda installation #3

eudesbarbosa opened this issue May 31, 2021 · 1 comment

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@eudesbarbosa
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Issue
Conda env takes forever to install - maybe revisit if all requirements are really necessary.

Proposed solution
A good chuck of entries in conda_env.yaml are associated to Bioconductor/R, perhaps specific packages can be installed as they are required for specific templates. Example:
https://vbaliga.github.io/verify-that-r-packages-are-installed-and-loaded/
@holtgrewe
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Ensure that you're using mamba. Current Snakemake versions actually use mamba by default now... it's so much faster.

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@holtgrewe @eudesbarbosa