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When using ngs-chew serve on a collection of npz-files the chrx_het_hom column of the calculated dataframe has no values (all entries are None) and the corresponding column/variable in the dash app ("het/hom calls on chrX") can also not be used.
To Reproduce
Using ngs-chew 0.9.2. (+ dash / dash-bootstrap-components 1.5)
Steps to reproduce the behavior:
run ngs-chew serve --strip-suffix suffix ped_example.ped *.npz
The "chrx_het_hom" column in the logged data frame will only show 'None'
The "het/hom calls on chrX" column/variable in the dash app is empty
Expected behavior
The values should be calculated and available.
The text was updated successfully, but these errors were encountered:
Our chrX calls are too few (864). Probably that can't be helped and the chrX fraction of reads is more informative. We should probably just remove writing out that feature.
The RS identifiers are not annotated and not stable. However,
the stable ones for chrX turned out to have too few positives
for the molecular sex determination.
The RS identifiers are not annotated and not stable. However,
the stable ones for chrX turned out to have too few positives
for the molecular sex determination.
Describe the bug
When using
ngs-chew serve
on a collection of npz-files thechrx_het_hom
column of the calculated dataframe has no values (all entries are None) and the corresponding column/variable in the dash app ("het/hom calls on chrX") can also not be used.To Reproduce
Using ngs-chew 0.9.2. (+ dash / dash-bootstrap-components 1.5)
Steps to reproduce the behavior:
ngs-chew serve --strip-suffix suffix ped_example.ped *.npz
Expected behavior
The values should be calculated and available.
The text was updated successfully, but these errors were encountered: