Changelog

0.4.0 (2024-08-29)

Features

dump OpenAPI YAML in python -m dotty.main (#100) (#101) (55c343e)

0.3.1 (2023-12-28)

Bug Fixes

small improvements for robustness (#43) (b159086)

0.3.0 (2023-10-16)

Features

Add status field to spdi response (#17) (#18) (152c414)

0.2.1 (2023-10-16)

Bug Fixes

Loading transcript mapping in lifespan (#14) (#15) (62fdc32)

0.2.0 (2023-10-15)

Features

Endpoint for retrieving all transcripts for a given HGNC ID (#11) (#12) (2b425bf)

Documentation

add usage note (#9) (5f82241)

0.1.2 (2023-10-04)

Bug Fixes

left-alignment in to-spdi with custom Babelfish (#7) (5e78db7)

0.1.1 (2023-10-04)

Bug Fixes

build docker image in release-please (#5) (213c1c6)

0.1.0 (2023-10-04)

Features

adding driver clas to wrap with cdot and hgvs (#1) (4ce6d19)
implementing web service for resolving to SPDI (#4) (8e76ced)

0.5.0 (2023-09-18)

Features

adding "tune run-optuna" command (#23) (6cc753b)
re-useable implementation of "tune train-eval" (#21) (c80c4bf)

0.4.0 (2023-09-14)

Features

adding dump-graph to cli (#18) (3aace31)
adding param-opt command with single parameter evaluation (#20) (83141c6)
allow running with legacy model/graph data (#16) (9d3cc7c)
embedding parameters can be provided via CLI and contains seeds (#19) (bbd5d86)

0.3.1 (2023-09-13)

Bug Fixes

add missing line endings to hgnc_info.jsonl (#13) (aa14b9b)
properly parsing comma-separated list on REST API (#14) (97fdfee)

0.3.0 (2023-09-11)

Features

also adding gene-to-phen edges from HPO (#9) (d5a8337)

0.2.1 (2023-09-08)

Bug Fixes

removing spurious debug print statement (#7) (98e7443)

0.2.0 (2023-09-08)

Features

gene to phenotype links file can be gziped (#5) (66c48bf)

0.1.0 (2023-09-07)

Features

adding REST API server for prediction (#4) (8bb7516)
initial training implementation (#1) (10d3a7c)
prioritization prediction with model (#3) (48d504c)