NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(plot,evidence_plot_data)
S3method(print,evidence_plot_data)
S3method(print,seasnap_DE_pipeline)
S3method(print,seasnap_mapping_pipeline)
S3method(summary,seasnap_DE_pipeline)
S3method(summary,seasnap_mapping_pipeline)
export(biglist)
export(disco_color_scale)
export(disco_score)
export(get_all)
export(get_annot)
export(get_config)
export(get_contrast_names)
export(get_contrasts)
export(get_counts)
export(get_covariates)
export(get_deseq2)
export(get_exprs)
export(get_extensions)
export(get_file_tab)
export(get_object)
export(get_object_path)
export(get_pca)
export(get_steps)
export(get_tmod_dbs)
export(get_tmod_gene_lists)
export(get_tmod_mapping)
export(get_tmod_pca_prcomp)
export(get_tmod_pca_res)
export(get_tmod_res)
export(load_de_pipeline)
export(load_mapping_pipeline)
export(pip_to_seapiper)
export(plot_disco)
export(plot_evidence)
export(plot_gene)
export(plot_gene_generic)
export(plot_ly_pca)
export(plot_tmod_panelplot)
export(plot_tmod_pca)
export(plot_tmod_pca_evidence)
export(test_gsea_tmod)
export(test_results_tabbed_DT)
export(tmod_db_map_ids)
import(DT)
import(RColorBrewer)
import(colorDF)
import(dplyr)
import(ggplot2)
import(ggrepel)
import(purrr)
import(tibble)
import(tmod)
importFrom(SummarizedExperiment,assay)
importFrom(glue,glue)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,palette)
importFrom(knitr,knit_child)
importFrom(lubridate,now)
importFrom(methods,as)
importFrom(plotly,add_trace)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(plotly,plotly_build)
importFrom(purrr,map_dfc)
importFrom(purrr,map_dfr)
importFrom(stats,cor)
importFrom(stats,prcomp)
importFrom(stats,var)
importFrom(tmod,tmodDecideTests)
importFrom(tmod,tmodPanelPlot)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(yaml,read_yaml)