From c278cf382461ba98e9958a4fddc0d1b366c09746 Mon Sep 17 00:00:00 2001 From: Neal Kruis Date: Wed, 13 Nov 2024 17:39:48 -0700 Subject: [PATCH 1/8] Use CLoader. --- lattice/docs/process_template.py | 7 ++- lattice/file_io.py | 2 +- lattice/meta_schema.py | 3 +- poetry.lock | 79 +++++++++++++++++++++++++++++++- pyproject.toml | 3 ++ 5 files changed, 86 insertions(+), 8 deletions(-) diff --git a/lattice/docs/process_template.py b/lattice/docs/process_template.py index b7375d8..ccb2543 100644 --- a/lattice/docs/process_template.py +++ b/lattice/docs/process_template.py @@ -8,7 +8,7 @@ import traceback from jinja2 import Environment, FileSystemLoader, select_autoescape, TemplateNotFound -import yaml +from lattice.file_io import load from .schema_table import ( load_structure_from_object, @@ -142,8 +142,7 @@ def load_yaml_source(schema_dir, source, args_str): src_path = os.path.join(schema_dir, source + ".schema.yaml") if not os.path.exists(src_path): return (make_error_string(f'Schema source "{source}" ("{src_path}") doesn\'t exist!', args_str), None) - with open(src_path, encoding="utf-8", mode="r") as input_file: - data = yaml.load(input_file, Loader=yaml.FullLoader) + data = load(src_path) return (None, data) @@ -198,7 +197,7 @@ def make_add_yaml_table(): """ def add_yaml_table(content, caption=None): - table_data = yaml.load(content, Loader=yaml.FullLoader) + table_data = load(content) columns = table_data["Headers"] data = {} for i, column in enumerate(columns): diff --git a/lattice/file_io.py b/lattice/file_io.py index e28cf0d..24d0bed 100644 --- a/lattice/file_io.py +++ b/lattice/file_io.py @@ -39,7 +39,7 @@ def load(input_file_path) -> dict: return cbor2.load(input_file) elif ext in [".yaml", ".yml"]: with open(input_file_path, "r", encoding="utf-8") as input_file: - return yaml.load(input_file, Loader=yaml.FullLoader) + return yaml.load(input_file, Loader=yaml.CLoader) else: raise ValueError(f'Unsupported input "{ext}".') diff --git a/lattice/meta_schema.py b/lattice/meta_schema.py index 7ea00f2..0d8b060 100644 --- a/lattice/meta_schema.py +++ b/lattice/meta_schema.py @@ -20,8 +20,7 @@ def __init__(self, schema_path): self.validator = jsonschema.Draft7Validator(json.load(meta_schema_file), resolver=resolver) def validate(self, instance_path): - with open(os.path.join(instance_path), "r") as input_file: - instance = yaml.load(input_file, Loader=yaml.FullLoader) + instance = load(instance_path) errors = sorted(self.validator.iter_errors(instance), key=lambda e: e.path) file_name = os.path.basename(instance_path) if len(errors) == 0: diff --git a/poetry.lock b/poetry.lock index c664215..b089f6d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -908,6 +908,83 @@ files = [ [package.extras] windows-terminal = ["colorama (>=0.4.6)"] +[[package]] +name = "pyinstrument" +version = "5.0.0" +description = "Call stack profiler for Python. 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"litestar", "numpy"] +test = ["cffi (>=1.17.0)", "flaky", "greenlet (>=3)", "ipython", "pytest", "pytest-asyncio (==0.23.8)", "trio"] +types = ["typing-extensions"] + [[package]] name = "pylint" version = "3.2.2" @@ -1457,4 +1534,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "60059c5c1dc86088edeb5b6b13c60d50d2667c83ee1d2b35b4600dc0b917ed0e" +content-hash = "599664a270170ce425715700fc2f454ee0365682ba6834a6db9de1fb935a4677" diff --git a/pyproject.toml b/pyproject.toml index 2049467..1dfee40 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,6 +26,9 @@ pylint = "*" black = "*" tomli = "2.0.1" +[tool.poetry.group.extras.dependencies] +pyinstrument = "*" + [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" From a19ccaf46c1e7881625339c33e767065f85ed9ae Mon Sep 17 00:00:00 2001 From: Neal Kruis Date: Thu, 14 Nov 2024 11:02:28 -0700 Subject: [PATCH 2/8] Allow manual workflow dispatch. --- .github/workflows/build-and-test.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml index 1752116..013fad9 100644 --- a/.github/workflows/build-and-test.yaml +++ b/.github/workflows/build-and-test.yaml @@ -4,6 +4,7 @@ on: push: schedule: - cron: "0 9 * * SUN" + workflow_dispatch: jobs: build: From ee3afd37df541b6a46378590df9dc35fdf80373d Mon Sep 17 00:00:00 2001 From: Neal Kruis Date: Thu, 14 Nov 2024 11:11:14 -0700 Subject: [PATCH 3/8] Update python dependencies. --- poetry.lock | 1224 +++++++++++++++++++++++++++------------------------ 1 file changed, 655 insertions(+), 569 deletions(-) diff --git a/poetry.lock b/poetry.lock index b089f6d..c3f1d52 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,13 +2,13 @@ [[package]] name = "astroid" -version = "3.2.2" +version = "3.2.4" description = "An abstract syntax tree for Python with inference support." 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insertions(+), 1 deletion(-) diff --git a/lattice/docs/process_template.py b/lattice/docs/process_template.py index ccb2543..e88c2ab 100644 --- a/lattice/docs/process_template.py +++ b/lattice/docs/process_template.py @@ -9,6 +9,7 @@ from jinja2 import Environment, FileSystemLoader, select_autoescape, TemplateNotFound from lattice.file_io import load +import yaml from .schema_table import ( load_structure_from_object, @@ -197,7 +198,7 @@ def make_add_yaml_table(): """ def add_yaml_table(content, caption=None): - table_data = load(content) + table_data = yaml.load(content, Loader=yaml.CLoader) columns = table_data["Headers"] data = {} for i, column in enumerate(columns): From 1eec158474e18ff6ca32da747fa50d0aa038305a Mon Sep 17 00:00:00 2001 From: Neal Kruis Date: Mon, 30 Dec 2024 17:36:50 -0700 Subject: [PATCH 7/8] Update python dependencies. --- .github/workflows/build-and-test.yaml | 2 +- .github/workflows/release.yaml | 2 +- poetry.lock | 592 ++++++++++++++------------ pyproject.toml 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