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After review there were several inconsistencies found in the file MdTag.scala in terms of error logging.
throw new IllegalArgumentException(s"MdTag $mdTagInput does not start with a digit")
case _ => throw new IllegalStateException("Could not find deleted base at cigar offset " + i)
These are included in the code without a clear pattern to their usage. In addition the error messages associated are inconsistent in detail.
The text was updated successfully, but these errors were encountered:
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After review there were several inconsistencies found in the file MdTag.scala in terms of error logging.
throw new IllegalArgumentException(s"MdTag $mdTagInput does not start with a digit")
case _ => throw new IllegalStateException("Could not find deleted base at cigar offset " + i)
These are included in the code without a clear pattern to their usage. In addition the error messages associated are inconsistent in detail.
The text was updated successfully, but these errors were encountered: