From e05ba9321daaf9156146ed36c03fdc8e2ae1fb43 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Tue, 11 Jul 2023 10:28:42 -0400 Subject: [PATCH] [FIX] Update links to BIDS examples (#1545) --- src/appendices/qmri.md | 2 +- src/modality-specific-files/electroencephalography.md | 2 +- .../intracranial-electroencephalography.md | 2 +- .../magnetic-resonance-imaging-data.md | 4 ++-- src/modality-specific-files/magnetoencephalography.md | 2 +- src/modality-specific-files/microscopy.md | 2 +- src/modality-specific-files/motion.md | 2 +- src/modality-specific-files/near-infrared-spectroscopy.md | 2 +- .../physiological-and-other-continuous-recordings.md | 2 +- src/modality-specific-files/positron-emission-tomography.md | 2 +- 10 files changed, 11 insertions(+), 11 deletions(-) diff --git a/src/appendices/qmri.md b/src/appendices/qmri.md index dc85f678e0..d174bd6421 100644 --- a/src/appendices/qmri.md +++ b/src/appendices/qmri.md @@ -195,7 +195,7 @@ It is RECOMMENDED to share them along with the vendor outputs, whenever possible ### Example datasets You can find example file collections and qMRI maps organized according to BIDS -in the [BIDS examples](https://github.com/bids-standard/bids-examples#qmri-datasets). +in the [BIDS examples](https://bids-standard.github.io/bids-examples/#qmri). ## Metadata requirements for qMRI data diff --git a/src/modality-specific-files/electroencephalography.md b/src/modality-specific-files/electroencephalography.md index 88ea187deb..781993e1bc 100644 --- a/src/modality-specific-files/electroencephalography.md +++ b/src/modality-specific-files/electroencephalography.md @@ -6,7 +6,7 @@ Please see [Citing BIDS](../introduction.md#citing-bids) on how to appropriately credit this extension when referring to it in the context of the academic literature. -Several [example EEG datasets](https://github.com/bids-standard/bids-examples#eeg-datasets) +Several [example EEG datasets](https://bids-standard.github.io/bids-examples/#eeg) have been formatted using this specification and can be used for practical guidance when curating a new dataset. diff --git a/src/modality-specific-files/intracranial-electroencephalography.md b/src/modality-specific-files/intracranial-electroencephalography.md index 3e961ad704..56d047a6b6 100644 --- a/src/modality-specific-files/intracranial-electroencephalography.md +++ b/src/modality-specific-files/intracranial-electroencephalography.md @@ -6,7 +6,7 @@ Please see [Citing BIDS](../introduction.md#citing-bids) on how to appropriately credit this extension when referring to it in the context of the academic literature. -Several [example iEEG datasets](https://github.com/bids-standard/bids-examples#ieeg-datasets) +Several [example iEEG datasets](https://bids-standard.github.io/bids-examples/#ieeg) have been formatted using this specification and can be used for practical guidance when curating a new dataset. diff --git a/src/modality-specific-files/magnetic-resonance-imaging-data.md b/src/modality-specific-files/magnetic-resonance-imaging-data.md index 953e9f2cc9..7099836c40 100644 --- a/src/modality-specific-files/magnetic-resonance-imaging-data.md +++ b/src/modality-specific-files/magnetic-resonance-imaging-data.md @@ -852,7 +852,7 @@ JSON example: ## Arterial Spin Labeling perfusion data -Several [example ASL datasets](https://github.com/bids-standard/bids-examples#asl-datasets) +Several [example ASL datasets](https://bids-standard.github.io/bids-examples/#asl) have been formatted using this specification and can be used for practical guidance when curating a new dataset. @@ -1095,7 +1095,7 @@ For example: #### Case 1: Phase-difference map and at least one magnitude image -[Example datasets](https://github.com/bids-standard/bids-examples) +[Example datasets](https://bids-standard.github.io/bids-examples/#dataset-index) containing that type of fieldmap can be found here: - [`7t_trt`](https://github.com/bids-standard/bids-examples/tree/master/7t_trt) diff --git a/src/modality-specific-files/magnetoencephalography.md b/src/modality-specific-files/magnetoencephalography.md index 6f0b4c0baa..c85e20f7ce 100644 --- a/src/modality-specific-files/magnetoencephalography.md +++ b/src/modality-specific-files/magnetoencephalography.md @@ -12,7 +12,7 @@ and can be used for practical guidance when curating a new dataset. - [`multimodal MEG and MRI`](https://github.com/bids-standard/bids-examples/tree/master/ds000117) Further datasets are available from -the [BIDS examples repository](https://github.com/bids-standard/bids-examples). +the [BIDS examples repository](https://bids-standard.github.io/bids-examples/#meg). ## MEG recording data diff --git a/src/modality-specific-files/microscopy.md b/src/modality-specific-files/microscopy.md index 4c56cea6eb..f70e521321 100644 --- a/src/modality-specific-files/microscopy.md +++ b/src/modality-specific-files/microscopy.md @@ -8,7 +8,7 @@ on how to appropriately credit this extension when referring to it in the context of the academic literature. Microscopy datasets formatted using this specification are available on the -[BIDS examples repository](https://github.com/bids-standard/bids-examples#microscopy-datasets) +[BIDS examples repository](https://bids-standard.github.io/bids-examples/#microscopy) and can be used for practical guidance when curating a new dataset. Further Microscopy datasets are available: diff --git a/src/modality-specific-files/motion.md b/src/modality-specific-files/motion.md index 1c83de6fe0..1e151baef9 100644 --- a/src/modality-specific-files/motion.md +++ b/src/modality-specific-files/motion.md @@ -3,7 +3,7 @@ For information on how to cite this extension when referencing it in the context of the academic literature, please read [Citing BIDS](../introduction.md#citing-bids). Motion datasets formatted using this specification are available on the -[BIDS examples repository](https://github.com/bids-standard/bids-examples#motion-datasets) +[BIDS examples repository](https://bids-standard.github.io/bids-examples/#motion) and can be used as helpful guidance when curating new datasets. ## Motion recording data diff --git a/src/modality-specific-files/near-infrared-spectroscopy.md b/src/modality-specific-files/near-infrared-spectroscopy.md index 90f7eb0fd0..1947836c17 100644 --- a/src/modality-specific-files/near-infrared-spectroscopy.md +++ b/src/modality-specific-files/near-infrared-spectroscopy.md @@ -6,7 +6,7 @@ Please see [Citing BIDS](../introduction.md#citing-bids) on how to appropriately credit this extension when referring to it in the context of the academic literature. -Several [example NIRS datasets](https://github.com/bids-standard/bids-examples#nirs-datasets) +Several [example NIRS datasets](https://bids-standard.github.io/bids-examples/#nirs) have been formatted using this specification and can be used for practical guidance when curating a new dataset. ## NIRS recording data diff --git a/src/modality-specific-files/physiological-and-other-continuous-recordings.md b/src/modality-specific-files/physiological-and-other-continuous-recordings.md index 4df83b9999..72df5d4814 100644 --- a/src/modality-specific-files/physiological-and-other-continuous-recordings.md +++ b/src/modality-specific-files/physiological-and-other-continuous-recordings.md @@ -9,7 +9,7 @@ specified using two files: 1. a JSON file for storing metadata fields (see below) -[Example datasets](https://github.com/bids-standard/bids-examples) +[Example datasets](https://bids-standard.github.io/bids-examples/#dataset-index) with physiological data have been formatted using this specification and can be used for practical guidance when curating a new dataset: diff --git a/src/modality-specific-files/positron-emission-tomography.md b/src/modality-specific-files/positron-emission-tomography.md index c021f82a8a..c16d144b4f 100644 --- a/src/modality-specific-files/positron-emission-tomography.md +++ b/src/modality-specific-files/positron-emission-tomography.md @@ -6,7 +6,7 @@ Please see [Citing BIDS](../introduction.md#citing-bids) on how to appropriately credit this extension when referring to it in the context of the academic literature. -Several [example PET datasets](https://github.com/bids-standard/bids-examples#pet-datasets) +Several [example PET datasets](https://bids-standard.github.io/bids-examples/#pet) have been formatted using this specification and can be used for practical guidance when curating a new dataset.