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Phase II: gDR integration #130

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5 tasks
ChristopherEeles opened this issue Oct 5, 2021 · 0 comments
Open
5 tasks

Phase II: gDR integration #130

ChristopherEeles opened this issue Oct 5, 2021 · 0 comments
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@p-smirnov @ChristopherEeles
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enhancement help wanted

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@ChristopherEeles
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  • Identify a PSet with appropriate control data to be input at the start of the gDR pipeline
  • Add the control data to the LongTable object in this PSet and test that coercion to gDR format works correctly
  • Ensure LongTable -> SummarizedExperiment coercion is compatible with all steps of gDR pipeline
  • Visualize the results of the gDR pipeline with gDRviz
  • Work with Genentech to test database integration of PSet to their database via gDR pipeline and REST API
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@ChristopherEeles ChristopherEeles

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@p-smirnov @ChristopherEeles