_pkgdown.yml

url: https://bhattacharya-a-bt.github.io/isotwas/
template:
  bootstrap: 5
  bslib:
    pkgdown-nav-height: 100px
reference:
  - title: "Training models"
    desc: >
      Functions for training multivariate predictive models
    contents:
      - compute_isotwas
      - curds_whey
      - compute_curds_whey
      - finemap_regress
      - compute_finemap_regress
      - compute_fixed
      - compute_mrce
      - compute_omega
      - compute_blup
      - multivariate_elasticnet
      - multivariate_joinet
      - multivariate_spls
      - univariate_blup
      - univariate_elasticnet
      - univariate_susie
      - convert_model
  - title: "Trait mapping"
    desc: >
      Stage-wise trait mapping
    contents:
      - p_screen
      - p_confirm
      - burdenTest
  - title: "Probabilistic fine-mapping"
    desc: >
      Functions for FOCUS-like probabilistic fine-mapping
    contents:
      - twas_finemap
      - estimate_cor
      - get_resid
      - bayes_factor
      - conditional_test_focus
      - conditional_test