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Releases: bgruening/docker-galaxy-stable

Galaxy Docker Image 17.09

04 Nov 13:58
1b028a4
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  • much improved documentation about using Galaxy Docker and an external cluster (@rhpvorderman)
  • CVMFS support - mounting in 4TB of pre-build reference data (@chambm)
  • Singularity support and tests (compose only)
  • more work on K8s support and testing (@jmchilton)
  • using .env files to configure the compose setup for SLURM, Condor, K8s, SLURM-Singularity, Condor-Docker

Galaxy Docker Image 17.05

28 May 10:19
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  • add PROXY_PREFIX variable to enable automatic configuration of Galaxy running under some prefix (@abretaud)
  • enable quota by default (just the funtionality, not any specific value)
  • HT-Condor is now supported in compose with semi-autoscaling and BioContainers
  • using Docker build-args for GALAXY_RELEASE and GALAXY_REPO

Docker Compose version

  • Galaxy Docker Compose is completely under Travis testing
  • SLURM and HT-Condor setups provided via .env files
  • HT-Condor can be used with BioContainers
  • added pgadmin for devops
  • rabbitmq as a separate container
  • added an autoscaling example for HT-Condor

Galaxy Docker Image 17.01

28 Feb 23:23
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  • enable Conda dependency resultion by default
  • Galaxy in version 17.01
  • more compose work (slurm, postgresql)

Galaxy Docker Image 16.10

15 Dec 23:25
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Galaxy Docker Image 16.07

26 Aug 19:16
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  • uses Galaxy in version 16.07
  • documentation and tests updates for SLURM integration by @mvdbeek
  • first version with initial Docker compose support (proftpd ✔️)
  • SFTP support by @zfrenchee
  • using the galaxy-postgresql ansible role to manage the DB-setup

Galaxy Docker Image 16.04

18 May 21:42
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  • include a Galaxy-bare mode, enable with -e BARE=True
  • first release with HTCondor installed and pre-configured
  • a lot of documentation improvements
  • all features from Galaxy 16.04

Galaxy Docker Image 16.01

27 Feb 08:36
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  • based on Galaxy 16.01, with all it's new awesome features
  • enable Travis testing for all builds and PR
  • offer new yaml based tool installations
  • enable dynamic UWSGI processes and threads with -e UWSGI_PROCESSES=2 and -e UWSGI_THREADS=4
  • enable dynamic Galaxy handlers -e GALAXY_HANDLER_NUMPROCS=2
  • a new lite mode contributed by @kellrott
  • first release with Jupyter integration

Galaxy Docker Image 15.10

06 Dec 17:22
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  • Galaxy 15.10 release with all the new features
  • fix #94
  • documentation improvements by @afgane

Galaxy Docker Image 15.07

03 Sep 18:37
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  • Galaxy 15.07 release with all the new features
  • add new tool to activate arbritrary Tool Sheds
  • add new tool to install BioJS visualisations
  • improvements to Galaxy startup if the database starts slowly (@shiltemann)
  • add configurable postgres UID/GID (@chambm)
  • documentation improvements by @dpryan79

Galaxy Docker Image 15.03

25 Mar 13:42
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This version is based on Galaxy 15.03.
Highlights:

  • Image is now based on Ubuntu 14.04
  • base the image on toolshed/requirements with all required Galaxy dependencies
  • use Ansible roles to build large parts of the image
  • export the supervisord webinterface on port 9002
  • enable Galaxy reports webapp on /reports
  • enable/disable services like FTP or Galaxy reports during startup