Releases: bgruening/docker-galaxy-stable
Releases · bgruening/docker-galaxy-stable
Galaxy Docker Image 17.09
- much improved documentation about using Galaxy Docker and an external cluster (@rhpvorderman)
- CVMFS support - mounting in 4TB of pre-build reference data (@chambm)
- Singularity support and tests (compose only)
- more work on K8s support and testing (@jmchilton)
- using .env files to configure the compose setup for SLURM, Condor, K8s, SLURM-Singularity, Condor-Docker
Galaxy Docker Image 17.05
- add PROXY_PREFIX variable to enable automatic configuration of Galaxy running under some prefix (@abretaud)
- enable quota by default (just the funtionality, not any specific value)
- HT-Condor is now supported in compose with semi-autoscaling and BioContainers
- using Docker build-args for GALAXY_RELEASE and GALAXY_REPO
Docker Compose version
- Galaxy Docker Compose is completely under Travis testing
- SLURM and HT-Condor setups provided via
.env
files - HT-Condor can be used with BioContainers
- added pgadmin for devops
- rabbitmq as a separate container
- added an autoscaling example for HT-Condor
Galaxy Docker Image 17.01
- enable Conda dependency resultion by default
- Galaxy in version 17.01
- more compose work (slurm, postgresql)
Galaxy Docker Image 16.10
- HTTPS support by Marius van den Beek (@mvdbeek) and Alexander Lenail (@zfrenchee)!
- New Docker compose work by Lukas Voegtle!
- New unified testing for Galaxy flavors (https://github.com/bgruening/galaxy-flavor-testing)
Galaxy Docker Image 16.07
- uses Galaxy in version 16.07
- documentation and tests updates for SLURM integration by @mvdbeek
- first version with initial Docker compose support (proftpd ✔️)
- SFTP support by @zfrenchee
- using the
galaxy-postgresql
ansible role to manage the DB-setup
Galaxy Docker Image 16.04
- include a Galaxy-bare mode, enable with
-e BARE=True
- first release with HTCondor installed and pre-configured
- a lot of documentation improvements
- all features from Galaxy 16.04
Galaxy Docker Image 16.01
- based on Galaxy 16.01, with all it's new awesome features
- enable Travis testing for all builds and PR
- offer new yaml based tool installations
- enable dynamic UWSGI processes and threads with -e UWSGI_PROCESSES=2 and -e UWSGI_THREADS=4
- enable dynamic Galaxy handlers -e GALAXY_HANDLER_NUMPROCS=2
- a new lite mode contributed by @kellrott
- first release with Jupyter integration
Galaxy Docker Image 15.10
Galaxy Docker Image 15.07
- Galaxy 15.07 release with all the new features
- add new tool to activate arbritrary Tool Sheds
- add new tool to install BioJS visualisations
- improvements to Galaxy startup if the database starts slowly (@shiltemann)
- add configurable postgres UID/GID (@chambm)
- documentation improvements by @dpryan79
Galaxy Docker Image 15.03
This version is based on Galaxy 15.03.
Highlights:
- Image is now based on Ubuntu 14.04
- base the image on toolshed/requirements with all required Galaxy dependencies
- use Ansible roles to build large parts of the image
- export the supervisord webinterface on port 9002
- enable Galaxy reports webapp on
/reports
- enable/disable services like FTP or Galaxy reports during startup