r-cmd-check.yml

name: R-CMD-check

on:
  push:
    branches:
      - master
  pull_request:
    branches:
      - master
  workflow_dispatch:

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: windows-latest, r: 'release'}
          - {os: windows-latest, r: 'devel'}
          - {os: macOS-latest, r: 'release'}
          - {os: macOS-latest, r: 'devel'}
          #- {os: ubuntu-latest, r: 'release'}
          #- {os: ubuntu-latest, r: 'devel'}
          - {os: ubuntu-22.04, r: 'release'}
          - {os: ubuntu-22.04, r: 'devel'}
          #- {os: ubuntu-20.04, r: 'release'}
          #- {os: ubuntu-20.04, r: 'devel'}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      GITHUB_PAT: ${{ secrets.MY_PAT }}
      R_KEEP_PKG_SOURCE: yes
      # https://github.com/r-lib/actions/issues/738
      PKG_SYSREQS: false

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: dependencies on Linux not met by setup-r@v2
        # https://github.com/r-lib/actions/issues/738
        if: runner.os == 'Linux'
        run: sudo apt-get install -y make libicu-dev libxml2-dev libssl-dev pandoc librdf0-dev libnode-dev libcurl4-gnutls-dev

      - name: R setup
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}

      - name: Pandoc setup
        uses: r-lib/actions/setup-pandoc@v2

      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Cache R packages
        if: runner.os != 'Windows'
        uses: actions/cache@v4
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        env:
          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
        run: |
          Rscript -e "remotes::install_github('r-hub/sysreqs')"
          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
          sudo -s eval "$sysreqs"
          sudo apt-get install libcurl4-openssl-dev libicu-dev texlive-latex-base libicu66

      - name: Install dependencies
        run: |
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("rcmdcheck")
          remotes::install_cran("covr")
        shell: Rscript {0}

      - name: Check Standard
        if: ( matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' ) == false
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
        shell: Rscript {0}

      - name: Install Valgrind (Linux-rdevel only)
        if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel'
        run: sudo apt-get install valgrind

      - name: Check Valgrind (Linux-rdevel only)
        if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel'
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
          # https://www.valgrind.org/docs/manual/manual-core.html
          VALGRIND_OPTS: "--leak-check=full --track-origins=yes"
          # https://www.stats.ox.ac.uk/pub/bdr/memtests/README.txt
          RJAVA_JVM_STACK_WORKAROUND: 0
          R_DONT_USE_TK: true
        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--use-valgrind"), error_on = "warning", check_dir = "check")
        shell: Rscript {0}

      - name: Code Coverage
        if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release'
        run: covr::codecov()
        shell: Rscript {0}

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@v4
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check