continuing to experiment with linux github build #37
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name: R-CMD-check | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
branches: | |
- master | |
workflow_dispatch: | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: windows-latest, r: 'release'} | |
- {os: windows-latest, r: 'devel'} | |
- {os: macOS-latest, r: 'release'} | |
- {os: macOS-latest, r: 'devel'} | |
#- {os: ubuntu-latest, r: 'release'} | |
#- {os: ubuntu-latest, r: 'devel'} | |
- {os: ubuntu-22.04, r: 'release'} | |
- {os: ubuntu-22.04, r: 'devel'} | |
#- {os: ubuntu-20.04, r: 'release'} | |
#- {os: ubuntu-20.04, r: 'devel'} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
GITHUB_PAT: ${{ secrets.MY_PAT }} | |
R_KEEP_PKG_SOURCE: yes | |
# https://github.com/r-lib/actions/issues/738 | |
PKG_SYSREQS: false | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: dependencies on Linux not met by setup-r@v2 | |
# https://github.com/r-lib/actions/issues/738 | |
if: runner.os == 'Linux' | |
run: sudo apt-get install -y make libicu-dev libxml2-dev libssl-dev pandoc librdf0-dev libnode-dev libcurl4-gnutls-dev | |
- name: R setup | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
- name: Pandoc setup | |
uses: r-lib/actions/setup-pandoc@v2 | |
- name: Query dependencies | |
run: | | |
install.packages('remotes') | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
shell: Rscript {0} | |
- name: Cache R packages | |
if: runner.os != 'Windows' | |
uses: actions/cache@v4 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
- name: Install system dependencies | |
if: runner.os == 'Linux' | |
env: | |
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
run: | | |
Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
sudo -s eval "$sysreqs" | |
sudo apt-get install libcurl4-openssl-dev libicu-dev texlive-latex-base libicu66 | |
- name: Install dependencies | |
run: | | |
remotes::install_deps(dependencies = TRUE) | |
remotes::install_cran("rcmdcheck") | |
remotes::install_cran("covr") | |
shell: Rscript {0} | |
- name: Check Standard | |
if: ( matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' ) == false | |
env: | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
shell: Rscript {0} | |
- name: Install Valgrind (Linux-rdevel only) | |
if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' | |
run: sudo apt-get install valgrind | |
- name: Check Valgrind (Linux-rdevel only) | |
if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'devel' | |
env: | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
# https://www.valgrind.org/docs/manual/manual-core.html | |
VALGRIND_OPTS: "--leak-check=full --track-origins=yes" | |
# https://www.stats.ox.ac.uk/pub/bdr/memtests/README.txt | |
RJAVA_JVM_STACK_WORKAROUND: 0 | |
R_DONT_USE_TK: true | |
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--use-valgrind"), error_on = "warning", check_dir = "check") | |
shell: Rscript {0} | |
- name: Code Coverage | |
if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' | |
run: covr::codecov() | |
shell: Rscript {0} | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check |