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config_scan.yml
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name: Scan Configs
on: [pull_request,workflow_dispatch]
env:
singularity_image: oras://ghcr.io/berenslab/retinal-rl:singularity-image-latest
sif_file: retinal-rl_singularity-image-latest.sif
jobs:
scan:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Setup Apptainer
uses: eWaterCycle/setup-apptainer@v2
with:
apptainer-version: 1.3.0
- name: Cache Singularity Image
id: cache-singularity
uses: actions/cache@v3
with:
path: ${{ env.sif_file }}
key: ${{ runner.os }}-singularity-${{ hashFiles('~/resources/retinal-rl.def') }}
restore-keys: |
${{ runner.os }}-singularity-${{ hashFiles('~/resources/retinal-rl.def') }}
${{ runner.os }}-singularity-
- name: Pull Singularity container
if: steps.cache-singularity.outputs.cache-hit != 'true'
run: |
singularity registry login --username ${{ github.actor }} --password ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io
singularity pull ${{ env.sif_file }} ${{ env.singularity_image }}
- name: Scan classification config
run: |
cp -r resources/config_templates/* config/
singularity exec ${{ env.sif_file }} \
python main.py -m +experiment=cifar10-class-recon command=scan system.device=cpu