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report.json
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report.json
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{
"annot_detail": {
"table_header": [
{
"field": "gene_id",
"label": "gene_id"
},
{
"field": "transcript_id",
"label": "transcript_id"
},
{
"field": "is_gene",
"label": "is_gene"
},
{
"field": "gene_name",
"label": "gene_name"
},
{
"field": "length",
"label": "length"
},
{
"field": "description",
"label": "description"
},
{
"field": "cog",
"label": "cog"
},
{
"field": "cog_description",
"label": "cog_description"
},
{
"field": "KO_id",
"label": "KO_id"
},
{
"field": "KO_name",
"label": "KO_name"
},
{
"field": "paths",
"label": "paths"
},
{
"field": "pfam",
"label": "pfam"
},
{
"field": "go",
"label": "go"
},
{
"field": "nr",
"label": "nr"
},
{
"field": "uniprot",
"label": "uniprot"
},
{
"field": "entrez",
"label": "entrez"
},
{
"field": "bio_type",
"label": "bio_type"
},
{
"field": "kegg_genes",
"label": "kegg_genes"
},
{
"field": "spe_path",
"label": "spe_path"
},
{
"field": "do",
"label": "do"
},
{
"field": "reactome_id",
"label": "reactome_id"
},
{
"field": "reactome_name",
"label": "reactome_name"
},
{
"field": "pathway_id",
"label": "pathway_id"
},
{
"field": "pathway_description",
"label": "pathway_description"
},
{
"field": "reactome_link",
"label": "reactome_link"
},
{
"field": "disgenet_name",
"label": "disgenet_name"
},
{
"field": "disgenet_id",
"label": "disgenet_id"
},
{
"field": "disgenet_des",
"label": "disgenet_des"
}
],
"table": [
{
"spe_path": NaN,
"cog_description": "3J6FI(negative regulation of peptidyl-lysine crotonylation)",
"pathway_id": NaN,
"is_gene": "yes",
"kegg_genes": NaN,
"go": "GO:0003824(molecular_function:catalytic activity); GO:0016021(cellular_component:integral component of membrane)",
"paths": NaN,
"KO_id": NaN,
"reactome_name": NaN,
"cog": "3J6FI(B:Chromatin structure and dynamics)",
"KO_name": NaN,
"reactome_link": NaN,
"nr": NaN,
"do": NaN,
"disgenet_des": NaN,
"description": "chromodomain protein, Y chromosome-like (CDYL) pseudogene",
"disgenet_name": NaN,
"gene_id": "ENSG00000282222",
"transcript_id": "ENST00000632688",
"bio_type": "processed_pseudogene",
"entrez": NaN,
"pfam": NaN,
"pathway_description": NaN,
"length": 757,
"disgenet_id": NaN,
"uniprot": NaN,
"reactome_id": NaN,
"gene_name": NaN
},
{
"spe_path": NaN,
"cog_description": NaN,
"pathway_id": NaN,
"is_gene": "yes",
"kegg_genes": NaN,
"go": NaN,
"paths": NaN,
"KO_id": NaN,
"reactome_name": NaN,
"cog": NaN,
"KO_name": NaN,
"reactome_link": NaN,
"nr": "XP_008974931.1(translation initiation factor IF-2-like [Pan paniscus])",
"do": NaN,
"disgenet_des": NaN,
"description": "novel transcript, antisense to LAD1",
"disgenet_name": NaN,
"gene_id": "ENSG00000282221",
"transcript_id": "ENST00000633182",
"bio_type": "lncRNA",
"entrez": NaN,
"pfam": NaN,
"pathway_description": NaN,
"length": 556,
"disgenet_id": NaN,
"uniprot": NaN,
"reactome_id": NaN,
"gene_name": NaN
},
{
"spe_path": NaN,
"cog_description": NaN,
"pathway_id": NaN,
"is_gene": "yes",
"kegg_genes": NaN,
"go": "GO:0035195(biological_process:gene silencing by miRNA); GO:2000773(biological_process:negative regulation of cellular senescence); GO:1903231(molecular_function:mRNA binding involved in posttranscriptional gene silencing)",
"paths": NaN,
"KO_id": NaN,
"reactome_name": NaN,
"cog": NaN,
"KO_name": NaN,
"reactome_link": NaN,
"nr": NaN,
"do": NaN,
"disgenet_des": NaN,
"description": "microRNA 543 [Source:HGNC Symbol;Acc:HGNC:33664]",
"disgenet_name": NaN,
"gene_id": "ENSG00000212040",
"transcript_id": "ENST00000390751",
"bio_type": "miRNA",
"entrez": NaN,
"pfam": NaN,
"pathway_description": NaN,
"length": 78,
"disgenet_id": NaN,
"uniprot": NaN,
"reactome_id": NaN,
"gene_name": "MIR543"
},
{
"spe_path": NaN,
"cog_description": "3J6F1(negative regulation of pancreatic amylase secretion)",
"pathway_id": "R-HSA-8876198;R-HSA-5357905;R-HSA-199991;R-HSA-73887;R-HSA-75893;R-HSA-9007101;R-HSA-162582;R-HSA-5653656;R-HSA-73887;R-HSA-75893;R-HSA-162582;R-HSA-5357905",
"is_gene": "no",
"kegg_genes": NaN,
"go": "GO:0000187(biological_process:activation of MAPK activity); GO:0005737(cellular_component:cytoplasm); GO:2001236(biological_process:regulation of extrinsic apoptotic signaling pathway); GO:1902041(biological_process:regulation of extrinsic apoptotic signaling pathway via death domain receptors); GO:0016021(cellular_component:integral component of membrane); GO:0005123(molecular_function:death receptor binding); GO:0051726(biological_process:regulation of cell cycle); GO:0097194(biological_process:execution phase of apoptosis); GO:0005829(cellular_component:cytosol); GO:0010803(biological_process:regulation of tumor necrosis factor-mediated signaling pathway); GO:0017112(molecular_function:Rab guanyl-nucleotide exchange factor activity); GO:0032483(biological_process:regulation of Rab protein signal transduction); GO:0007166(biological_process:cell surface receptor signaling pathway); GO:0005886(cellular_component:plasma membrane); GO:0042981(biological_process:regulation of apoptotic process); GO:0030295(molecular_function:protein kinase activator activity)",
"paths": NaN,
"KO_id": NaN,
"reactome_name": "MADD;DENN-SV",
"cog": "3J6F1(T:Signal transduction mechanisms)",
"KO_name": NaN,
"reactome_link": "R-HSA-8876198&SEL=R-HSA-5626972;R-HSA-5357905&SEL=R-HSA-5626972;R-HSA-199991&SEL=R-HSA-5626972;R-HSA-73887&SEL=R-HSA-5626972;R-HSA-75893&SEL=R-HSA-5626972;R-HSA-9007101&SEL=R-HSA-5626972;R-HSA-162582&SEL=R-HSA-5626972;R-HSA-5653656&SEL=R-HSA-5626972;R-HSA-73887&SEL=R-HSA-5626960;R-HSA-75893&SEL=R-HSA-5626960;R-HSA-162582&SEL=R-HSA-5626960;R-HSA-5357905&SEL=R-HSA-5626960",
"nr": "NP_003673(MAP kinase-activating death domain protein isoform 4 [Homo sapiens])",
"do": "DOID:9351(disease of metabolism: diabetes mellitus); DOID:769(disease of cellular proliferation: neuroblastoma); DOID:162(disease of cellular proliferation: cancer)",
"disgenet_des": "Congenital Abnormality; Alzheimer's Disease; Anxiety; Malignant neoplasm of breast; Malignant Neoplasms; Malignant neoplasm of thyroid; Celiac Disease; Transient Ischemic Attack; Coronary Arteriosclerosis; Coronary heart disease; Diabetes; Diabetes Mellitus; Diabetes Mellitus, Non-Insulin-Dependent; Glaucoma, Open-Angle; Glycogen Storage Disease Type III; Glycogen Storage Disease Type V; Malignant neoplasm of stomach; Neoplasm Metastasis; Neoplasms; Nervousness; Neuroblastoma; Thyroid Neoplasm; Secondary malignant neoplasm of lung; C-reactive protein measurement; Insulin measurement; Triglycerides measurement; Follicular thyroid carcinoma; Pancreatic carcinoma; Anaplastic thyroid carcinoma; Frontometaphyseal dysplasia; Multiple Acyl Coenzyme A Dehydrogenase Deficiency; Metabolic myopathy; Squamous cell carcinoma of esophagus; Renal carnitine transport defect; Malignant neoplasm of pancreas; High density lipoprotein measurement; Serum HDL cholesterol measurement; Fasting blood glucose measurement; Epileptic encephalopathy; Thyroid carcinoma; Carcinogenesis; mathematical ability; Breast Carcinoma; Stomach Carcinoma; Central neuroblastoma; Sleeplessness; Ischemic stroke; Heart Failure, Diastolic; Fasting blood sugar result; Deficiency of dehydrogenase; Body mass index; Primary malignant neoplasm; Age at menarche; Coronary Artery Disease; Secondary Neoplasm; Intellectual Disability; Childhood Neuroblastoma",
"description": "MAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]",
"disgenet_name": "MADD",
"gene_id": "ENSG00000110514",
"transcript_id": "ENST00000469699;ENST00000534808;ENST00000489415;ENST00000460452;ENST00000634938;ENST00000494403;ENST00000395336;ENST00000406482;ENST00000428807;ENST00000402799;ENST00000453571;ENST00000349238;ENST00000407859;ENST00000405573;ENST00000444117;ENST00000524530;ENST00000422579;ENST00000311027;ENST00000395344;ENST00000402192;ENST00000342922;ENST00000524686;ENST00000526603",
"bio_type": "protein_coding",
"entrez": "8567",
"pfam": "PF03456(uDENN:uDENN domain); PF02141(DENN:DENN (AEX-3) domain)",
"pathway_description": "RAB GEFs exchange GTP for GDP on RABs;Regulation of TNFR1 signaling;Membrane Trafficking;Death Receptor Signalling;TNF signaling;Rab regulation of trafficking;Signal Transduction;Vesicle-mediated transport;Death Receptor Signalling;TNF signaling;Signal Transduction;Regulation of TNFR1 signaling",
"length": 924,
"disgenet_id": "C0000768; C0002395; C0003467; C0006142; C0006826; C0007115; C0007570; C0007787; C0010054; C0010068; C0011847; C0011849; C0011860; C0017612; C0017922; C0017924; C0024623; C0027627; C0027651; C0027769; C0027819; C0040136; C0153676; C0201657; C0202098; C0202236; C0206682; C0235974; C0238461; C0265293; C0268596; C0270984; C0279626; C0342788; C0346647; C0392885; C0428472; C0428568; C0543888; C0549473; C0596263; C0596887; C0678222; C0699791; C0700095; C0917801; C0948008; C1135196; C1261430; C1291311; C1305855; C1306459; C1314691; C1956346; C2939419; C3714756; C4086165",
"uniprot": "Q8WXG6(MAP kinase-activating death domain protein OS=Homo sapiens OX=9606 GN=MADD PE=1 SV=2)",
"reactome_id": "R-HSA-5626972;R-HSA-5626960",
"gene_name": "MADD"
},
{
"spe_path": NaN,
"cog_description": NaN,
"pathway_id": NaN,
"is_gene": "yes",
"kegg_genes": NaN,
"go": NaN,
"paths": NaN,
"KO_id": NaN,
"reactome_name": NaN,
"cog": NaN,
"KO_name": NaN,
"reactome_link": NaN,
"nr": NaN,
"do": NaN,
"disgenet_des": NaN,
"description": "novel transcript, antisense to GPC5",
"disgenet_name": NaN,
"gene_id": "ENSG00000287159",
"transcript_id": "ENST00000662499",
"bio_type": "lncRNA",
"entrez": NaN,
"pfam": NaN,
"pathway_description": NaN,
"length": 1067,
"disgenet_id": NaN,
"uniprot": NaN,
"reactome_id": NaN,
"gene_name": NaN
},
{
"spe_path": NaN,
"cog_description": "3JD0E(regulation of interleukin-12 biosynthetic process)",
"pathway_id": NaN,
"is_gene": "no",
"kegg_genes": "hsa:23139",
"go": "GO:0005737(cellular_component:cytoplasm); GO:0006468(biological_process:protein phosphorylation); GO:0018105(biological_process:peptidyl-serine phosphorylation); GO:0007010(biological_process:cytoskeleton organization); GO:0045075(biological_process:regulation of interleukin-12 biosynthetic process); GO:0008017(molecular_function:microtubule binding); GO:0000287(molecular_function:magnesium ion binding); GO:0004674(molecular_function:protein serine/threonine kinase activity); GO:0015630(cellular_component:microtubule cytoskeleton); GO:0019902(molecular_function:phosphatase binding); GO:0048515(biological_process:spermatid differentiation); GO:0005886(cellular_component:plasma membrane); GO:0035556(biological_process:intracellular signal transduction); GO:0005524(molecular_function:ATP binding)",
"paths": NaN,
"KO_id": "K08789",
"reactome_name": NaN,
"cog": "3JD0E(T:Signal transduction mechanisms)",
"KO_name": "MAST",
"reactome_link": NaN,
"nr": "NP_001311249(microtubule-associated serine/threonine-protein kinase 2 isoform 3 [Homo sapiens])",
"do": NaN,
"disgenet_des": "Body Height; Encephalomyelitis; Red Blood Cell Count measurement; Glioblastoma; White Blood Cell Count procedure; Neoplasms; Stage 0 Breast Carcinoma; Neutrophil count (procedure); Blood basophil count (lab test); Reticulocyte count (procedure); Adult Glioblastoma; Childhood Glioblastoma; Neurodegenerative Disorders; Breast Carcinoma; Granulocyte count; Body mass index; Invasive Carcinoma; Mucinous carcinoma of breast; Ovarian Mucinous Adenocarcinoma; Glioblastoma Multiforme; Azoospermia, Nonobstructive; Stage 0 Breast Cancer AJCC v6 and v7",
"description": "microtubule associated serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:19035]",
"disgenet_name": "MAST2",
"gene_id": "ENSG00000086015",
"transcript_id": "ENST00000482881;ENST00000477968;ENST00000492813;ENST00000467367;ENST00000488619;ENST00000372009;ENST00000372008;ENST00000361297;ENST00000470809;ENST00000498668;ENST00000674079",
"bio_type": "protein_coding",
"entrez": "23139",
"pfam": "PF00069(Pkinase:Protein kinase domain); PF08926(DUF1908:Domain of unknown function (DUF1908)); PF17820(PDZ_6:PDZ domain); PF07714(PK_Tyr_Ser-Thr:Protein tyrosine and serine/threonine kinase); PF00595(PDZ:PDZ domain); PF13180(PDZ_2:PDZ domain); PF03109(ABC1:ABC1 atypical kinase-like domain); PF01636(APH:Phosphotransferase enzyme family)",
"pathway_description": NaN,
"length": 858,
"disgenet_id": "C0005890; C0014070; C0014772; C0017636; C0023508; C0027651; C0154084; C0200633; C0200641; C0206161; C0278878; C0280474; C0524851; C0678222; C0857490; C1305855; C1334274; C1334807; C1335167; C1621958; C1847540; C4520821",
"uniprot": "Q6P0Q8(Microtubule-associated serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=MAST2 PE=1 SV=2)",
"reactome_id": NaN,
"gene_name": "MAST2"
},
{
"spe_path": NaN,
"cog_description": NaN,
"pathway_id": NaN,
"is_gene": "yes",
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"Total_Reads": 5000000
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