From 1c6b113549ef87fe74c6b501275fae64a2c470aa Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 12:45:52 +0200 Subject: [PATCH 01/54] Moved source to src folder --- base_util.py => src/base_util.py | 0 io_util.py => src/io_util.py | 0 main_data_processor.py => src/main_data_processor.py | 0 models.py => src/models.py | 0 whisper.py => src/whisper.py | 0 worker.py => src/worker.py | 0 6 files changed, 0 insertions(+), 0 deletions(-) rename base_util.py => src/base_util.py (100%) rename io_util.py => src/io_util.py (100%) rename main_data_processor.py => src/main_data_processor.py (100%) rename models.py => src/models.py (100%) rename whisper.py => src/whisper.py (100%) rename worker.py => src/worker.py (100%) diff --git a/base_util.py b/src/base_util.py similarity index 100% rename from base_util.py rename to src/base_util.py diff --git a/io_util.py b/src/io_util.py similarity index 100% rename from io_util.py rename to src/io_util.py diff --git a/main_data_processor.py b/src/main_data_processor.py similarity index 100% rename from main_data_processor.py rename to src/main_data_processor.py diff --git a/models.py b/src/models.py similarity index 100% rename from models.py rename to src/models.py diff --git a/whisper.py b/src/whisper.py similarity index 100% rename from whisper.py rename to src/whisper.py diff --git a/worker.py b/src/worker.py similarity index 100% rename from worker.py rename to src/worker.py From 53f951c00597611c4ed081219f0108373aca68bc Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 12:46:17 +0200 Subject: [PATCH 02/54] Init for src --- src/__init__.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 src/__init__.py diff --git a/src/__init__.py b/src/__init__.py new file mode 100644 index 0000000..e69de29 From 2574d4cf812d2e9b8db3cd849e55f815c1bc8b83 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 12:46:42 +0200 Subject: [PATCH 03/54] Setting up Flask app, WIP --- src/app/__init__.py | 32 ++++++++++++++++++++++++ src/app/api.py | 5 ++++ src/app/health_check.py | 55 +++++++++++++++++++++++++++++++++++++++++ 3 files changed, 92 insertions(+) create mode 100644 src/app/__init__.py create mode 100644 src/app/api.py create mode 100644 src/app/health_check.py diff --git a/src/app/__init__.py b/src/app/__init__.py new file mode 100644 index 0000000..8df0c27 --- /dev/null +++ b/src/app/__init__.py @@ -0,0 +1,32 @@ +from flask import Flask +import api +# from flask_cors import CORS +from flask import send_from_directory, url_for +from app.health_check import HealthCheckProxy + + +def create_app(): + app = Flask("search") + app.config["DEBUG"] = True + # CORS(app) + + app.logger.info("initializing api") + api.init_app( + app, + title="Beeld en Geluid Search API", + description="Access the various collections hosted in the B&G laboratory", + ) + + @property # type: ignore + def specs_url(self): + app.logger.debug("Entered function") + return url_for(self.endpoint("specs"), _external=True, _scheme="https") + + @app.route("/robots.txt") + def static_from_root(): + return send_from_directory(app.static_folder, "robots.txt") + + # wires up the ping and ready check + HealthCheckProxy(app) + + return app diff --git a/src/app/api.py b/src/app/api.py new file mode 100644 index 0000000..500e968 --- /dev/null +++ b/src/app/api.py @@ -0,0 +1,5 @@ +from flask_restx import Api + +apiVersion = "v1.1" +basePath = "/api/%s" % apiVersion +api = Api(version=apiVersion) diff --git a/src/app/health_check.py b/src/app/health_check.py new file mode 100644 index 0000000..c135c6d --- /dev/null +++ b/src/app/health_check.py @@ -0,0 +1,55 @@ +import logging +import json +from typing import Dict, Any +from flask import Response + + +logger = logging.getLogger(f"search.{__name__}") + + +class HealthCheckProxy: + def __init__(self, app): + self.app = app + self.app.add_url_rule("/ping", view_func=self.ping, methods=["GET"]) + self.app.add_url_rule("/ready", view_func=self.ready, methods=["GET"]) + + def ping(self) -> Response: + logger.debug("Received ping") + return Response("pong", mimetype="text/plain") + + def ready(self) -> Response: + logger.debug("Checking availability all external connections") + + connections: dict[str, Dict[str, Any]] = {} + logger.info(connections) + + return self.check_connections(connections) + + def check_connections(self, connections: Dict[str, Dict[str, Any]]) -> Response: + logger.info("Checking the following connections") + logger.debug(connections) + overall_status = 200 + for c in connections.values(): + logger.debug(c) + try: + c["statusCode"] = requests.get( + c["connectionUrl"], verify=False, timeout=5 + ).status_code + except Exception as e: + logger.exception( + f"Unhandled ready check error for {c['connectionUrl']}" + ) + c["error"] = str(e) + c["statusCode"] = 502 + + if c["statusCode"] < 200 or c["statusCode"] >= 300: + logger.error( + f"Connection {c['connectionUrl']} failed with {c['statusCode']}" + ) + overall_status = 502 + + return Response( + json.dumps({"status": overall_status}, indent=4, sort_keys=True), + overall_status, + mimetype="application/json", + ) From 828c562ce7b806abf60faf3e4dec0c3f28344032 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 12:47:12 +0200 Subject: [PATCH 04/54] Add Flask dependencies to dedicated dependency group --- poetry.lock | 710 +++++++++++++++++++++++++++++++++++-------------- pyproject.toml | 7 + 2 files changed, 514 insertions(+), 203 deletions(-) diff --git a/poetry.lock b/poetry.lock index 2cc9e5e..1928499 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,92 +1,125 @@ -# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. + +[[package]] +name = "aniso8601" +version = "9.0.1" +description = "A library for parsing ISO 8601 strings." +optional 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"sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"] -test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "jaraco.test", "mypy (==1.10.0)", "packaging (>=23.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy", "pytest-perf", "pytest-ruff (>=0.3.2)", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "jaraco.test", "mypy (==1.11.*)", "packaging (>=23.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy", "pytest-perf", "pytest-ruff (<0.4)", "pytest-ruff (>=0.2.1)", "pytest-ruff (>=0.3.2)", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] [[package]] name = "six" @@ -1399,13 +1703,13 @@ files = [ [[package]] name = "sympy" -version = "1.13.0" +version = "1.13.1" description = "Computer algebra system (CAS) in Python" optional = false python-versions = ">=3.8" files = [ - {file = "sympy-1.13.0-py3-none-any.whl", hash = "sha256:6b0b32a4673fb91bd3cac3b55406c8e01d53ae22780be467301cc452f6680c92"}, - {file = "sympy-1.13.0.tar.gz", hash = "sha256:3b6af8f4d008b9a1a6a4268b335b984b23835f26d1d60b0526ebc71d48a25f57"}, + {file = "sympy-1.13.1-py3-none-any.whl", hash = "sha256:db36cdc64bf61b9b24578b6f7bab1ecdd2452cf008f34faa33776680c26d66f8"}, + {file = "sympy-1.13.1.tar.gz", hash = "sha256:9cebf7e04ff162015ce31c9c6c9144daa34a93bd082f54fd8f12deca4f47515f"}, ] [package.dependencies] @@ -1544,13 +1848,13 @@ files = [ [[package]] name = "tqdm" -version = "4.66.4" +version = "4.66.5" description = "Fast, Extensible Progress Meter" optional = false python-versions = ">=3.7" files = [ - {file = "tqdm-4.66.4-py3-none-any.whl", hash = "sha256:b75ca56b413b030bc3f00af51fd2c1a1a5eac6a0c1cca83cbb37a5c52abce644"}, - {file = "tqdm-4.66.4.tar.gz", hash = "sha256:e4d936c9de8727928f3be6079590e97d9abfe8d39a590be678eb5919ffc186bb"}, + {file = "tqdm-4.66.5-py3-none-any.whl", hash = "sha256:90279a3770753eafc9194a0364852159802111925aa30eb3f9d85b0e805ac7cd"}, + {file = "tqdm-4.66.5.tar.gz", hash = "sha256:e1020aef2e5096702d8a025ac7d16b1577279c9d63f8375b63083e9a5f0fcbad"}, ] [package.dependencies] @@ -1660,4 +1964,4 @@ PyYAML = "*" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "07e83ee48adf09494e0ad08314f18e019f881e7ecf0b4495703ba8f8ef43a7b5" +content-hash = "602caacd5638d2ad2dd152b6381298efaf259d7620657dc3c3763e5d2005e36e" diff --git a/pyproject.toml b/pyproject.toml index d234117..928a279 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -22,6 +22,13 @@ black = "^24.3.0" mypy = "^0.982" types-requests = "^2.28.11.2" + +[tool.poetry.group.service.dependencies] +flask = "^3.0.3" +flask-restx = "^1.3.0" + + + [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" From 5fb42dbe8aa13695130216ac95d74f4f1f32daf5 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 15:22:15 +0200 Subject: [PATCH 05/54] Renamed app folder to service --- src/{app => service}/__init__.py | 0 src/{app => service}/api.py | 0 src/{app => service}/health_check.py | 0 3 files changed, 0 insertions(+), 0 deletions(-) rename src/{app => service}/__init__.py (100%) rename src/{app => service}/api.py (100%) rename src/{app => service}/health_check.py (100%) diff --git a/src/app/__init__.py b/src/service/__init__.py similarity index 100% rename from src/app/__init__.py rename to src/service/__init__.py diff --git a/src/app/api.py b/src/service/api.py similarity index 100% rename from src/app/api.py rename to src/service/api.py diff --git a/src/app/health_check.py b/src/service/health_check.py similarity index 100% rename from src/app/health_check.py rename to src/service/health_check.py From c2d76dd6afded7ea98da9f1e4b6efdadfc37117d Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 15:29:13 +0200 Subject: [PATCH 06/54] Moved worker.py outside src --- src/worker.py => worker.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename src/worker.py => worker.py (100%) diff --git a/src/worker.py b/worker.py similarity index 100% rename from src/worker.py rename to worker.py From 529fd32a0cef7067623bbb17ed9c37f4c60b2f4b Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 15:30:41 +0200 Subject: [PATCH 07/54] Fixed structure & imports --- src/io_util.py | 2 +- src/main_data_processor.py | 6 +++--- src/service/__init__.py | 12 ++++++------ src/service/api.py | 5 ----- src/service/health_check.py | 1 + src/whisper.py | 4 ++-- worker.py | 8 ++++---- 7 files changed, 17 insertions(+), 21 deletions(-) delete mode 100644 src/service/api.py diff --git a/src/io_util.py b/src/io_util.py index 162ffce..94a7f7a 100644 --- a/src/io_util.py +++ b/src/io_util.py @@ -9,7 +9,7 @@ from dane import Document from dane.config import cfg from dane.s3_util import S3Store, parse_s3_uri, validate_s3_uri -from models import ( +from .models import ( OutputType, Provenance, WhisperASRInput, diff --git a/src/main_data_processor.py b/src/main_data_processor.py index 3dbed06..0710ec7 100644 --- a/src/main_data_processor.py +++ b/src/main_data_processor.py @@ -2,7 +2,7 @@ from typing import Tuple, Optional from dane.config import cfg from dane.s3_util import validate_s3_uri -from io_util import ( +from .io_util import ( # type:ignore get_base_output_dir, get_output_file_path, get_s3_output_file_uri, @@ -14,7 +14,7 @@ delete_input_file, validate_data_dirs, ) -from models import ( +from .models import ( # type:ignore CallbackResponse, WhisperASRInput, WhisperASROutput, @@ -26,7 +26,7 @@ generate_initial_provenance, stop_timer_and_persist_provenance_chain, ) -from whisper import run_whisper +from .whisper import run_whisper # type:ignore logger = logging.getLogger(__name__) diff --git a/src/service/__init__.py b/src/service/__init__.py index 8df0c27..24a5cf6 100644 --- a/src/service/__init__.py +++ b/src/service/__init__.py @@ -1,8 +1,8 @@ from flask import Flask -import api +from .rest_api import api # from flask_cors import CORS -from flask import send_from_directory, url_for -from app.health_check import HealthCheckProxy +from flask import url_for # , send_from_directory +from .health_check import HealthCheckProxy def create_app(): @@ -22,9 +22,9 @@ def specs_url(self): app.logger.debug("Entered function") return url_for(self.endpoint("specs"), _external=True, _scheme="https") - @app.route("/robots.txt") - def static_from_root(): - return send_from_directory(app.static_folder, "robots.txt") + # @app.route("/robots.txt") + # def static_from_root(): + # return send_from_directory(app.static_folder, "robots.txt") # wires up the ping and ready check HealthCheckProxy(app) diff --git a/src/service/api.py b/src/service/api.py deleted file mode 100644 index 500e968..0000000 --- a/src/service/api.py +++ /dev/null @@ -1,5 +0,0 @@ -from flask_restx import Api - -apiVersion = "v1.1" -basePath = "/api/%s" % apiVersion -api = Api(version=apiVersion) diff --git a/src/service/health_check.py b/src/service/health_check.py index c135c6d..2af6553 100644 --- a/src/service/health_check.py +++ b/src/service/health_check.py @@ -2,6 +2,7 @@ import json from typing import Dict, Any from flask import Response +import requests logger = logging.getLogger(f"search.{__name__}") diff --git a/src/whisper.py b/src/whisper.py index 99df968..5ccd219 100644 --- a/src/whisper.py +++ b/src/whisper.py @@ -1,4 +1,4 @@ -from models import ( +from .models import ( WhisperASRInput, WhisperASROutput, OutputType, @@ -9,7 +9,7 @@ import ast from dane.config import cfg from dane.provenance import Provenance -from io_util import ( +from .io_util import ( get_base_output_dir, get_output_file_path, check_model_availability, diff --git a/worker.py b/worker.py index a4304ee..4c198a5 100644 --- a/worker.py +++ b/worker.py @@ -1,19 +1,19 @@ import logging import sys import os -from base_util import validate_config +from src.base_util import validate_config from dane import Document, Task, Result from dane.base_classes import base_worker from dane.config import cfg from dane.provenance import Provenance -from models import CallbackResponse -from io_util import ( +from src.models import CallbackResponse +from src.io_util import ( fetch_input_s3_uri, source_id_from_s3_uri, get_s3_output_file_uri, ) from pika.exceptions import ChannelClosedByBroker # type: ignore -import main_data_processor +import src.main_data_processor as main_data_processor logger = logging.getLogger() From dd6db72a789dc5f9e1a71c9e7da1061394a322f6 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 15:31:04 +0200 Subject: [PATCH 08/54] Add callable for service --- server.py | 3 +++ 1 file changed, 3 insertions(+) create mode 100644 server.py diff --git a/server.py b/server.py new file mode 100644 index 0000000..005d78a --- /dev/null +++ b/server.py @@ -0,0 +1,3 @@ +from src.service import create_app + +app = create_app() From c70ab268b72f3dac56f1694aa55cc7ca2aecac58 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 15:33:13 +0200 Subject: [PATCH 09/54] rename api module --- src/service/rest_api.py | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 src/service/rest_api.py diff --git a/src/service/rest_api.py b/src/service/rest_api.py new file mode 100644 index 0000000..a6334ba --- /dev/null +++ b/src/service/rest_api.py @@ -0,0 +1,5 @@ +from flask_restx import Api # type: ignore + +apiVersion = "v1.1" +basePath = "/api/%s" % apiVersion +api = Api(version=apiVersion) From 658862f69008b0a653167bd19e8d2a7d211caa5a Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 5 Aug 2024 15:33:36 +0200 Subject: [PATCH 10/54] Make src a package to be installed --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index 928a279..66d7a31 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,6 +5,7 @@ description = "DANE worker for Whisper" authors = ["Dragos Alexandru Balan "] license = "MIT" readme = "README.md" +packages = [{include = "src"}] [tool.poetry.dependencies] python = "^3.10" From fe60573e3e04eeb7d8108cf02c3d15f803bc87ba Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 8 Aug 2024 09:42:51 +0200 Subject: [PATCH 11/54] Update README.md Brief explanation on service setup --- README.md | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 001d0b9..c24e2c0 100644 --- a/README.md +++ b/README.md @@ -24,4 +24,12 @@ You can also specify an S3 URI if you have your own custom model available via S To run it using a GPU via Docker, check [the instructions from the dane-example-worker](https://github.com/beeldengeluid/dane-example-worker/wiki/Containerization#running-the-container-locally-using-cuda-compatible-gpu). -Make sure to replace `dane-example-worker` in the `docker run` command with `dane-whisper-asr-worker`. \ No newline at end of file +Make sure to replace `dane-example-worker` in the `docker run` command with `dane-whisper-asr-worker`. + + +## Running as a service +This is work in progress. +The worker can also run separately from DANE, as a service based on Flask. An API endpoint is defined to get the worker to transcribe an audio file and transfer the results to S3. + +For this functionality to work, install the dependency group: `tool.poetry.group.service.dependencies` using `poetry install --with service`. +The service can be started by running `poetry run flask --app src/service run <--debug>` From d5e872730ebb47cdde103725d2d67000b628ff62 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 8 Aug 2024 09:44:05 +0200 Subject: [PATCH 12/54] Make service dependency group optional --- poetry.lock | 2 +- pyproject.toml | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index 1928499..2b7e0c9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1964,4 +1964,4 @@ PyYAML = "*" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "602caacd5638d2ad2dd152b6381298efaf259d7620657dc3c3763e5d2005e36e" +content-hash = "bfe517d13ba0bab7d5a9876e682fee18d2d3142c61d41fc152f3bfc778ef3412" diff --git a/pyproject.toml b/pyproject.toml index 66d7a31..b53d05e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,13 +23,13 @@ black = "^24.3.0" mypy = "^0.982" types-requests = "^2.28.11.2" +[tool.poetry.group.service] +optional = true [tool.poetry.group.service.dependencies] flask = "^3.0.3" flask-restx = "^1.3.0" - - [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" From 5441450bef0913d04f1b37b7ef102e4808dfec95 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 8 Aug 2024 09:46:54 +0200 Subject: [PATCH 13/54] Renamed app to service --- server.py | 2 +- src/service/__init__.py | 28 ++++++++++++++-------------- 2 files changed, 15 insertions(+), 15 deletions(-) diff --git a/server.py b/server.py index 005d78a..454cf90 100644 --- a/server.py +++ b/server.py @@ -1,3 +1,3 @@ from src.service import create_app -app = create_app() +service = create_app() diff --git a/src/service/__init__.py b/src/service/__init__.py index 24a5cf6..c9d4543 100644 --- a/src/service/__init__.py +++ b/src/service/__init__.py @@ -1,32 +1,32 @@ from flask import Flask from .rest_api import api # from flask_cors import CORS -from flask import url_for # , send_from_directory +from flask import url_for, send_from_directory from .health_check import HealthCheckProxy def create_app(): - app = Flask("search") - app.config["DEBUG"] = True - # CORS(app) + service = Flask("transcribe") + service.config["DEBUG"] = True + # CORS(service) - app.logger.info("initializing api") + service.logger.info("initializing api") api.init_app( - app, - title="Beeld en Geluid Search API", - description="Access the various collections hosted in the B&G laboratory", + service, + title="Beeld en Geluid Transcription API", + description="Transcribe an audio file using Whisper ASR", ) @property # type: ignore def specs_url(self): - app.logger.debug("Entered function") + service.logger.debug("Entered function") return url_for(self.endpoint("specs"), _external=True, _scheme="https") - # @app.route("/robots.txt") - # def static_from_root(): - # return send_from_directory(app.static_folder, "robots.txt") + @service.route("/robots.txt") + def static_from_root(): + return send_from_directory(service.static_folder, "robots.txt") # wires up the ping and ready check - HealthCheckProxy(app) + HealthCheckProxy(service) - return app + return service From 9d2737fa1867d66e82aedbffd59a6cd120920471 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 8 Aug 2024 09:47:48 +0200 Subject: [PATCH 14/54] Renamed app to service --- src/service/health_check.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/service/health_check.py b/src/service/health_check.py index 2af6553..0fc7c1c 100644 --- a/src/service/health_check.py +++ b/src/service/health_check.py @@ -9,10 +9,10 @@ class HealthCheckProxy: - def __init__(self, app): - self.app = app - self.app.add_url_rule("/ping", view_func=self.ping, methods=["GET"]) - self.app.add_url_rule("/ready", view_func=self.ready, methods=["GET"]) + def __init__(self, service): + self.service = service + self.service.add_url_rule("/ping", view_func=self.ping, methods=["GET"]) + self.service.add_url_rule("/ready", view_func=self.ready, methods=["GET"]) def ping(self) -> Response: logger.debug("Received ping") From b0819c301eaceb611e45d757e001f654bbb3af0a Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 8 Aug 2024 09:48:00 +0200 Subject: [PATCH 15/54] Started API definition --- src/service/rest_api.py | 15 ++++++++++++++- 1 file changed, 14 insertions(+), 1 deletion(-) diff --git a/src/service/rest_api.py b/src/service/rest_api.py index a6334ba..8cf1253 100644 --- a/src/service/rest_api.py +++ b/src/service/rest_api.py @@ -1,5 +1,18 @@ -from flask_restx import Api # type: ignore +from flask_restx import Api, Namespace # type: ignore apiVersion = "v1.1" basePath = "/api/%s" % apiVersion api = Api(version=apiVersion) + + +transcribe_api = Namespace("Transcribe", description="Transcribe audio file") + +transcribe_response = api.model( + "TranscribeResponse", + { + "task_id": 'this_is_not_a_valid_id' + }) + + +api.add_namespace(transcribe_api, path="%s/transcribe" % basePath) + From 480e10992c964fd4210b8dc8366007d17020c755 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 8 Aug 2024 15:11:03 +0200 Subject: [PATCH 16/54] Add actual content to api definition --- src/service/rest_api.py | 88 ++++++++++++++++++++++++++++++++++++++--- 1 file changed, 83 insertions(+), 5 deletions(-) diff --git a/src/service/rest_api.py b/src/service/rest_api.py index 8cf1253..43583a2 100644 --- a/src/service/rest_api.py +++ b/src/service/rest_api.py @@ -1,18 +1,96 @@ -from flask_restx import Api, Namespace # type: ignore +from flask import request, url_for +from flask_restx import Api, Namespace, Resource # type: ignore +from ..main_data_processor import run as transcription_process +from ..models import CallbackResponse +import asyncio +from time import time + + +running_transcriptions: dict[str, asyncio.Task] = {} apiVersion = "v1.1" basePath = "/api/%s" % apiVersion api = Api(version=apiVersion) - transcribe_api = Namespace("Transcribe", description="Transcribe audio file") -transcribe_response = api.model( - "TranscribeResponse", +transcribe_request = api.model( + "TranscribeRequest", { - "task_id": 'this_is_not_a_valid_id' + 'doc_id': 'this_is_not_a_valid_id', + 'location': 'this_is_not_a_valid_S3_URI' }) api.add_namespace(transcribe_api, path="%s/transcribe" % basePath) + +@api.route("/transcribe", endpoint="Request new audio file transcription") +class TranscriptionEndpoint(Resource): + @api.expect(transcribe_request) + def post(self): + params = request.get_json(force=True) + + # if busy processing something else: refuse + task = asyncio.current_task() + if task is not None: + return { + "status": 503, + "message": "Busy on another transcription" + } + # if available: spin up processing + document_id = params['doc_id'] + processing_id = document_id + str(time) + task = asyncio.create_task(transcription_process(input_file_path=params['location'])) + running_transcriptions[processing_id] = task + response = { + "processing_id": processing_id, + "status_handler": url_for(StatusEndpoint, processing_id), + "message": f"Transciption task created for document {document_id}.", + "status": 201 + } + return response + + +@api.route("/tasks/", endpoint="Audio file transcription Task") +class StatusEndpoint(Resource): + + def get(self, processing_id): + response = { + "processing_id": processing_id, + "message": "", + "state": 500 + } + try: + task = running_transcriptions[processing_id] + if task.done(): + callbackresponse = task.result() + response['message'] = callbackresponse['message'] + response['state'] = callbackresponse['state'] + # TODO: Add information: whereabouts of the processing result! + # NB: need to adjust src/main_data_processor.py + if task.cancelled() or task.cancelling(): + response['message'] = "Transcription was cancelled" + response['state'] = 204 + else: + # other cases + True + except KeyError: + response['message'] = f"Processing id {processing_id} Unknown" + response['state'] = 404 + return response + + def delete(self, processing_id): + try: + task = running_transcriptions[processing_id] + task.cancel() + response = { + "message": f"Cancelled processing of {processing_id}", + "state": 202, + } + except KeyError: + response = { + "message": f"Processing id Unknown: {processing_id}", + "state": 404, + } + return response From b5a5ad96dbcec725141b2fc0e87a74796e3f232c Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 8 Aug 2024 15:11:31 +0200 Subject: [PATCH 17/54] Renamed to api, becaus it is strictly not restful --- src/service/{rest_api.py => api.py} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename src/service/{rest_api.py => api.py} (100%) diff --git a/src/service/rest_api.py b/src/service/api.py similarity index 100% rename from src/service/rest_api.py rename to src/service/api.py From 7d42d31ffb363dec3b957f0f891023c3987e5ff8 Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Mon, 23 Sep 2024 15:56:13 +0200 Subject: [PATCH 18/54] merged with main; restructured; server starts; just fix some flask error --- {src/service => app}/__init__.py | 5 +- src/base_util.py => base_util.py | 0 .../health_check.py => health_check.py | 0 poetry.lock | 1905 +++++++++++++++++ pyproject.toml | 5 +- scripts/run-api.sh | 26 + server.py | 4 +- src/__init__.py | 0 src/io_util.py | 365 ---- src/main_data_processor.py | 167 -- src/models.py | 33 - src/whisper.py => whisper.py | 20 - src/service/api.py => whisper_api.py | 42 +- worker.py | 177 -- 14 files changed, 1957 insertions(+), 792 deletions(-) rename {src/service => app}/__init__.py (88%) rename src/base_util.py => base_util.py (100%) rename src/service/health_check.py => health_check.py (100%) create mode 100644 poetry.lock create mode 100755 scripts/run-api.sh delete mode 100644 src/__init__.py delete mode 100644 src/io_util.py delete mode 100644 src/main_data_processor.py delete mode 100644 src/models.py rename src/whisper.py => whisper.py (88%) rename src/service/api.py => whisper_api.py (70%) delete mode 100644 worker.py diff --git a/src/service/__init__.py b/app/__init__.py similarity index 88% rename from src/service/__init__.py rename to app/__init__.py index c9d4543..148d658 100644 --- a/src/service/__init__.py +++ b/app/__init__.py @@ -1,8 +1,7 @@ from flask import Flask -from .rest_api import api -# from flask_cors import CORS +from whisper_api import api from flask import url_for, send_from_directory -from .health_check import HealthCheckProxy +from health_check import HealthCheckProxy def create_app(): diff --git a/src/base_util.py b/base_util.py similarity index 100% rename from src/base_util.py rename to base_util.py diff --git a/src/service/health_check.py b/health_check.py similarity index 100% rename from src/service/health_check.py rename to health_check.py diff 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$PORT | grep -E -q '^[0-9]+$' || die "Port number must be numeric, $PORT provided" + +SCRIPTPATH="$( cd "$(dirname "$0")" ; pwd -P )" + +# Load the environment vars +if [ -f "$SCRIPTPATH/../.env.override" ]; then + set -a + source $SCRIPTPATH/../.env.override + set +a +else + echo "No .env.override found" +fi + +cd "$SCRIPTPATH/.." + +flask --app app run --debug -p $PORT diff --git a/server.py b/server.py index 454cf90..15e9ffa 100644 --- a/server.py +++ b/server.py @@ -1,3 +1,5 @@ -from src.service import create_app +from app import create_app +# NOTE this file SHOULD make it backwards compatible with the existing supervisord config +# run this with: uwsgi --http 127.0.0.1:5304 --master -p 4 -w server:app service = create_app() diff --git a/src/__init__.py b/src/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/src/io_util.py b/src/io_util.py deleted file mode 100644 index 94a7f7a..0000000 --- a/src/io_util.py +++ /dev/null @@ -1,365 +0,0 @@ -import logging -import os -from pathlib import Path -import shutil -import tarfile -from time import time -from typing import Dict, List - -from dane import Document -from dane.config import cfg -from dane.s3_util import S3Store, parse_s3_uri, validate_s3_uri -from .models import ( - OutputType, - Provenance, - WhisperASRInput, -) - - -logger = logging.getLogger(__name__) -INPUT_GENERATOR_TASK_KEY = "SOME_KEY" -OUTPUT_FILE_BASE_NAME = "out" -TAR_GZ_EXTENSION = ".tar.gz" -S3_OUTPUT_TYPES: List[OutputType] = [ - OutputType.TRANSCRIPT, - OutputType.PROVENANCE, -] # only upload this output to S3 - - -# make sure the necessary base dirs are there -def validate_data_dirs() -> bool: # TODO: perhaps add model dir - i_dir = Path(get_download_dir()) - o_dir = Path(get_base_output_dir()) - - if not os.path.exists(i_dir.parent.absolute()): - logger.info( - f"{i_dir.parent.absolute()} does not exist." - "Make sure BASE_MOUNT_DIR exists before retrying" - ) - return False - - # make sure the input and output dirs are there - input_dir_created = create_directory(i_dir) - output_dir_created = create_directory(o_dir) - - return input_dir_created and output_dir_created - - -def create_directory(path: Path) -> bool: - """Create a directory if it doesn't exist.""" - if path.exists(): - logger.info(f"Directory already exists: {path}") - return True - try: - os.makedirs(path, mode=0o755) - logger.info(f"Created directory: {path}") - return True - except Exception as e: - logger.error(f"Failed to create directory {path}: {e}") - return False - - -# for each OutputType a subdir is created inside the base output dir -def generate_output_dirs(source_id: str) -> Dict[str, str]: - base_output_dir = get_base_output_dir(source_id) - output_dirs = {} - for output_type in OutputType: - output_dir = os.path.join(base_output_dir, output_type.value) - if not os.path.isdir(output_dir): - os.makedirs(output_dir) - output_dirs[output_type.value] = output_dir - return output_dirs - - -# below this dir each processing module will put its output data in a subfolder -def get_base_output_dir(source_id: str = "") -> str: - path_elements = [cfg.FILE_SYSTEM.BASE_MOUNT, cfg.FILE_SYSTEM.OUTPUT_DIR] - if source_id: - path_elements.append(source_id) - return os.path.join(*path_elements) - - -# output file name of the final tar.gz that will be uploaded to S3 -def get_archive_file_path(source_id: str) -> str: - return os.path.join( - get_base_output_dir(source_id), - f"{OUTPUT_FILE_BASE_NAME}__{source_id}{TAR_GZ_EXTENSION}", - ) - - -def get_output_file_name(source_id: str, output_type: OutputType) -> str: - output_file_name = "" - match output_type: - case OutputType.PROVENANCE: - output_file_name = source_id + "_provenance.json" - case OutputType.TRANSCRIPT: - output_file_name = source_id + ".json" - return output_file_name - - -# output file name of the final .pt file that will be uploaded to S3 -# TODO decide whether to tar.gz this as well -def get_output_file_path(source_id: str, output_type: OutputType) -> str: - return os.path.join( - get_base_output_dir(source_id), - output_type.value, - get_output_file_name(source_id, output_type), - ) - - -# e.g. s3:///assets/ -def get_s3_base_uri(source_id: str) -> str: - uri = os.path.join(cfg.OUTPUT.S3_BUCKET, cfg.OUTPUT.S3_FOLDER_IN_BUCKET, source_id) - return f"s3://{uri}" - - -# e.g. s3:///assets//__.tar.gz -def get_s3_output_file_uri(source_id: str) -> str: - return f"{get_s3_base_uri(source_id)}/{get_archive_file_path(source_id)}" - - -# NOTE: only use for test run & unit test with input that points to tar file! -# e.g. ./data/input-files/__testob.tar.gz -def get_source_id_from_tar(input_path: str) -> str: - fn = os.path.basename(input_path) - tmp = fn.split("__") - source_id = tmp[1][: -len(TAR_GZ_EXTENSION)] - logger.info(f"Using source_id: {source_id}") - return source_id - - -# e.g. s3:///assets//__.tar.gz -def source_id_from_s3_uri(s3_uri: str) -> str: - fn = os.path.basename(s3_uri) - tmp = fn.split("__") - source_id = tmp[1][: -len(TAR_GZ_EXTENSION)] - return source_id - - -def delete_local_output(source_id: str) -> bool: - output_dir = get_base_output_dir(source_id) - logger.info(f"Deleting output folder: {output_dir}") - if output_dir == os.sep or output_dir == ".": - logger.warning(f"Rejected deletion of: {output_dir}") - return False - - if not _is_valid_output(output_dir): - logger.warning( - f"Tried to delete a dir that did not contain output: {output_dir}" - ) - return False - - try: - shutil.rmtree(output_dir) - logger.info(f"Cleaned up folder {output_dir}") - except Exception: - logger.exception(f"Failed to delete output dir {output_dir}") - return False - return True - - -# TODO implement some more validation -def _is_valid_output(output_dir: str) -> bool: - provenance_exists = os.path.exists( - os.path.join(output_dir, OutputType.PROVENANCE.value) - ) - audio_exists = os.path.exists(os.path.join(output_dir, OutputType.TRANSCRIPT.value)) - return provenance_exists and audio_exists - - -def _validate_transfer_config() -> bool: - if any( - [ - not x - for x in [ - cfg.OUTPUT.S3_ENDPOINT_URL, - cfg.OUTPUT.S3_BUCKET, - cfg.OUTPUT.S3_FOLDER_IN_BUCKET, - ] - ] - ): - logger.warning( - "TRANSFER_ON_COMPLETION configured without all the necessary S3 settings" - ) - return False - return True - - -# compresses all desired output dirs into a single tar and uploads it to S3 -def transfer_output(source_id: str) -> bool: - output_dir = get_base_output_dir(source_id) - logger.info(f"Transferring {output_dir} to S3 (asset={source_id})") - if not _validate_transfer_config(): - return False - - s3 = S3Store(cfg.OUTPUT.S3_ENDPOINT_URL) - file_list = [os.path.join(output_dir, ot.value) for ot in S3_OUTPUT_TYPES] - tar_file = get_archive_file_path(source_id) - - success = s3.transfer_to_s3( - cfg.OUTPUT.S3_BUCKET, - os.path.join( - cfg.OUTPUT.S3_FOLDER_IN_BUCKET, source_id - ), # assets/__ - file_list, # this list of subdirs will be compressed into the tar below - tar_file, # this file will be uploaded - ) - if not success: - logger.error(f"Failed to upload: {tar_file}") - return False - return True - - -def get_download_dir() -> str: - return os.path.join(cfg.FILE_SYSTEM.BASE_MOUNT, cfg.FILE_SYSTEM.INPUT_DIR) - - -def get_base_input_dir(source_id: str) -> str: - return os.path.join(get_download_dir(), source_id) - - -def delete_input_file(input_file: str, source_id: str, actually_delete: bool) -> bool: - logger.info(f"Verifying deletion of input file: {input_file}") - if actually_delete is False: - logger.info("Configured to leave the input alone, skipping deletion") - return True - - # first remove the input file - try: - os.remove(input_file) - logger.info(f"Deleted input tar file: {input_file}") - except OSError: - logger.exception("Could not delete input file") - return False - - # now remove the folders that were extracted from the input tar file - base_input_dir = get_base_input_dir(source_id) - try: - for root, dirs, files in os.walk(base_input_dir): - for d in dirs: - dir_path = os.path.join(root, d) - logger.info(f"Deleting {dir_path}") - shutil.rmtree(dir_path) - logger.info("Deleted extracted input dirs") - os.removedirs(base_input_dir) - logger.info(f"Finally deleted the base_input_dir: {base_input_dir}") - except OSError: - logger.exception("OSError while removing empty input file dirs") - - return True # return True even if empty dirs were not removed - - -def obtain_input_file(s3_uri: str) -> WhisperASRInput: - - if not validate_s3_uri(s3_uri): - return WhisperASRInput(500, f"Invalid S3 URI: {s3_uri}") - - source_id = source_id_from_s3_uri(s3_uri) - start_time = time() - output_folder = get_base_input_dir(source_id) - - # download the content into get_download_dir() - s3 = S3Store(cfg.OUTPUT.S3_ENDPOINT_URL) - bucket, object_name = parse_s3_uri(s3_uri) - logger.info(f"OBJECT NAME: {object_name}") - input_file_path = os.path.join( - get_download_dir(), - source_id, - os.path.basename(object_name), # i.e. __.tar.gz - ) - success = s3.download_file(bucket, object_name, output_folder) - if success: - # uncompress the .tar.gz - if input_file_path.find(".tar.gz") != -1: - input_file_path = untar_input_file(input_file_path) - - provenance = Provenance( - activity_name="download", - activity_description="Download input data", - start_time_unix=start_time, - processing_time_ms=(time() - start_time) * 1000, - input_data={}, - output_data={"file_path": input_file_path}, - ) - return WhisperASRInput( - 200, - f"Downloaded input from: {s3_uri}", - source_id_from_s3_uri(s3_uri), # source_id - input_file_path, # locally downloaded .tar.gz - provenance, - ) - logger.error("Failed to download input data from S3") - return WhisperASRInput(500, f"Failed to download: {s3_uri}") - - -def fetch_input_s3_uri(handler, doc: Document) -> str: - logger.info("checking input") - possibles = handler.searchResult(doc._id, INPUT_GENERATOR_TASK_KEY) - logger.info(possibles) - if len(possibles) > 0 and "s3_location" in possibles[0].payload: - return possibles[0].payload.get("s3_location", "") - logger.error(f"No s3_location found in result for {INPUT_GENERATOR_TASK_KEY}") - return "" - - -# untars somefile.tar.gz into the same dir -def untar_input_file(tar_file_path: str) -> str: - logger.info(f"Uncompressing {tar_file_path}") - path = str(Path(tar_file_path).parent) - with tarfile.open(tar_file_path) as tar: - tar.extractall(path=path, filter="data") # type: ignore - filename = tar.getmembers()[0].name - return path + f"/{filename}" - - -# makes sure the model is available locally, if not download it from S3, if that fails download from Huggingface -def check_model_availability() -> bool: - logger = logging.getLogger(__name__) - if os.path.exists(cfg.FILE_SYSTEM.BASE_MOUNT_MODEL + "/model.bin"): - logger.info("Model found locally") - return True - else: - logger.info("Model not found locally, attempting to download from S3") - if not validate_s3_uri(cfg.WHISPER_ASR_SETTINGS.MODEL): - logger.info("No S3 URI detected") - logger.info( - f"Downloading version {cfg.WHISPER_ASR_SETTINGS.MODEL} from Huggingface instead" - ) - return False - s3 = S3Store(cfg.INPUT.S3_ENDPOINT_URL) - bucket, object_name = parse_s3_uri(cfg.WHISPER_ASR_SETTINGS.MODEL) - success = s3.download_file( - bucket, object_name, cfg.FILE_SYSTEM.BASE_MOUNT_MODEL - ) - if not success: - logger.error( - f"Could not download {cfg.WHISPER_ASR_SETTINGS.MODEL} into {cfg.FILE_SYSTEM.BASE_MOUNT_MODEL}" - ) - return False - logger.info( - f"Downloaded {cfg.WHISPER_ASR_SETTINGS.MODEL} into {cfg.FILE_SYSTEM.BASE_MOUNT_MODEL}" - ) - logger.info("Extracting the model") - tar_path = cfg.FILE_SYSTEM.BASE_MOUNT_MODEL + "/" + object_name - with tarfile.open(tar_path) as tar: - tar.extractall(path=cfg.FILE_SYSTEM.BASE_MOUNT_MODEL) - # cleanup: delete the tar file - os.remove(tar_path) - return True - - -def check_pretrained_model_availability() -> bool: - logger = logging.getLogger(__name__) - pretrained_models = [ - "tiny", - "base", - "small", - "medium", - "large", - "large-v2", - "large-v3", - ] - if cfg.WHISPER_ASR_SETTINGS.MODEL in pretrained_models: - return True - logger.error(f"'{cfg.WHISPER_ASR_SETTINGS.MODEL}' is not a valid pretrained model!") - return False diff --git a/src/main_data_processor.py b/src/main_data_processor.py deleted file mode 100644 index 0710ec7..0000000 --- a/src/main_data_processor.py +++ /dev/null @@ -1,167 +0,0 @@ -import logging -from typing import Tuple, Optional -from dane.config import cfg -from dane.s3_util import validate_s3_uri -from .io_util import ( # type:ignore - get_base_output_dir, - get_output_file_path, - get_s3_output_file_uri, - generate_output_dirs, - get_source_id_from_tar, - obtain_input_file, - transfer_output, - delete_local_output, - delete_input_file, - validate_data_dirs, -) -from .models import ( # type:ignore - CallbackResponse, - WhisperASRInput, - WhisperASROutput, - OutputType, -) -from dane.provenance import ( - Provenance, - obtain_software_versions, - generate_initial_provenance, - stop_timer_and_persist_provenance_chain, -) -from .whisper import run_whisper # type:ignore - - -logger = logging.getLogger(__name__) -DANE_WORKER_ID = "dane-whisper-asr-worker" - - -# triggered by running: python worker.py --run-test-file -def run(input_file_path: str) -> Tuple[CallbackResponse, Optional[Provenance]]: - # there must be an input file - if not input_file_path: - logger.error("input file empty") - return {"state": 403, "message": "Error, no input file"}, [] - - # check if the file system is setup properly - if not validate_data_dirs(): - logger.info("ERROR: data dirs not configured properly") - return {"state": 500, "message": "Input & output dirs not ok"}, [] - - # create the top-level provenance - top_level_provenance = generate_initial_provenance( - name="dane-whisper-asr-worker", - description=( - "DANE worker that runs Whisper for Automatic Speech Recognition (ASR)" - ), - input_data={"input_file_path": input_file_path}, - parameters=dict(cfg.WHISPER_ASR_SETTINGS), - software_version=obtain_software_versions(DANE_WORKER_ID), - ) - provenance_chain = [] # will contain the steps of the top-level provenance - - # S3 URI, local tar.gz or locally extracted tar.gz is allowed - if validate_s3_uri(input_file_path): - model_input = obtain_input_file(input_file_path) - else: - if input_file_path.find(".tar.gz") != -1: - source_id = get_source_id_from_tar(input_file_path) - else: - source_id = input_file_path.split("/")[-2] - - model_input = WhisperASRInput( - 200, - f"Processing tar.gz archive: {input_file_path}", - source_id, - input_file_path, - None, # no download provenance when using local file - ) - - # add the download provenance - if model_input.provenance: - provenance_chain.append(model_input.provenance) - - # first generate the output dirs - generate_output_dirs(model_input.source_id) - - # apply model to input & extract features - proc_result = run_whisper(model_input) - - if proc_result.provenance: - provenance_chain.append(proc_result.provenance) - - # as a last piece of output, generate the provenance.json before packaging&uploading - full_provenance_chain = stop_timer_and_persist_provenance_chain( - provenance=top_level_provenance, - output_data={ - "output_path": get_base_output_dir(model_input.source_id), - "output_uri": get_s3_output_file_uri(model_input.source_id), - }, - provenance_chain=provenance_chain, - provenance_file_path=get_output_file_path( - model_input.source_id, OutputType.PROVENANCE - ), - ) - - # if all is ok, apply the I/O steps on the outputted features - validated_output: CallbackResponse = apply_desired_io_on_output( - model_input, - proc_result, - cfg.INPUT.DELETE_ON_COMPLETION, - cfg.OUTPUT.DELETE_ON_COMPLETION, - cfg.OUTPUT.TRANSFER_ON_COMPLETION, - ) - logger.info("Results after applying desired I/O") - logger.info(validated_output) - return validated_output, full_provenance_chain - - -# assesses the output and makes sure input & output is handled properly -def apply_desired_io_on_output( - model_input: WhisperASRInput, - proc_result: WhisperASROutput, - delete_input_on_completion: bool, - delete_output_on_completion: bool, - transfer_output_on_completion: bool, -) -> CallbackResponse: - # raise exception on failure - if proc_result.state != 200: - logger.error(f"Could not process the input properly: {proc_result.message}") - # something went wrong inside the work processor, return that response - return {"state": proc_result.state, "message": proc_result.message} - - # process returned successfully, generate the output - source_id = model_input.source_id - output_path = get_base_output_dir(source_id) - - # transfer the output to S3 (if configured so) - transfer_success = True - if transfer_output_on_completion: - transfer_success = transfer_output(source_id) - - # failure of transfer, impedes the workflow, so return error - if not transfer_success: - return { - "state": 500, - "message": "Failed to transfer output to S3", - } - - # clear the output files (if configured so) - if delete_output_on_completion: - delete_success = delete_local_output(source_id) - if not delete_success: - # NOTE: just a warning for now, but one to keep an eye out for - logger.warning(f"Could not delete output files: {output_path}") - - # clean the input file (if configured so) - if not delete_input_file( - model_input.input_file_path, - model_input.source_id, - delete_input_on_completion, - ): - return { - "state": 500, - "message": "Applied model, but could not delete the input file", - } - - return { - "state": 200, - "message": "Successfully applied model", - } diff --git a/src/models.py b/src/models.py deleted file mode 100644 index 0c3872c..0000000 --- a/src/models.py +++ /dev/null @@ -1,33 +0,0 @@ -from dataclasses import dataclass -from enum import Enum -from typing import Optional, TypedDict -from dane.provenance import Provenance - - -# returned by callback() -class CallbackResponse(TypedDict): - state: int - message: str - - -# These are the types of output this worker (possibly) provides (depending on configuration) -class OutputType(Enum): - TRANSCRIPT = "transcript" - PROVENANCE = "provenance" # produced by provenance.py - - -@dataclass -class WhisperASRInput: - state: int # HTTP status code - message: str # error/success message - source_id: str = "" # __ - input_file_path: str = "" # where the audio was downloaded to - provenance: Optional[Provenance] = None # mostly: how long did it take to download - - -@dataclass -class WhisperASROutput: - state: int # HTTP status code - message: str # error/success message - output_file_path: str = "" # where to store the text file - provenance: Optional[Provenance] = None # audio extraction provenance diff --git a/src/whisper.py b/whisper.py similarity index 88% rename from src/whisper.py rename to whisper.py index c6a8ae2..e0c01b8 100644 --- a/src/whisper.py +++ b/whisper.py @@ -1,28 +1,8 @@ -<<<<<<< HEAD:src/whisper.py -from .models import ( - WhisperASRInput, - WhisperASROutput, - OutputType, -) -import logging -import time -import json -import ast -from dane.config import cfg -from dane.provenance import Provenance -from .io_util import ( - get_base_output_dir, - get_output_file_path, - check_model_availability, - check_pretrained_model_availability, -) -======= import ast import json import logging import os ->>>>>>> main:whisper.py import faster_whisper from config import ( model_base_dir, diff --git a/src/service/api.py b/whisper_api.py similarity index 70% rename from src/service/api.py rename to whisper_api.py index 43583a2..8a1c3b8 100644 --- a/src/service/api.py +++ b/whisper_api.py @@ -1,9 +1,8 @@ from flask import request, url_for from flask_restx import Api, Namespace, Resource # type: ignore -from ..main_data_processor import run as transcription_process -from ..models import CallbackResponse import asyncio from time import time +from asr import run running_transcriptions: dict[str, asyncio.Task] = {} @@ -16,10 +15,8 @@ transcribe_request = api.model( "TranscribeRequest", - { - 'doc_id': 'this_is_not_a_valid_id', - 'location': 'this_is_not_a_valid_S3_URI' - }) + {"doc_id": "this_is_not_a_valid_id", "location": "this_is_not_a_valid_S3_URI"}, +) api.add_namespace(transcribe_api, path="%s/transcribe" % basePath) @@ -34,20 +31,21 @@ def post(self): # if busy processing something else: refuse task = asyncio.current_task() if task is not None: - return { - "status": 503, - "message": "Busy on another transcription" - } + return {"status": 503, "message": "Busy on another transcription"} # if available: spin up processing - document_id = params['doc_id'] + document_id = params["doc_id"] processing_id = document_id + str(time) - task = asyncio.create_task(transcription_process(input_file_path=params['location'])) + task = asyncio.create_task( + run( + input_uri=params["location"], output_uri="TODO" + ) # TODO determine output_uri + ) running_transcriptions[processing_id] = task response = { "processing_id": processing_id, "status_handler": url_for(StatusEndpoint, processing_id), "message": f"Transciption task created for document {document_id}.", - "status": 201 + "status": 201, } return response @@ -56,28 +54,24 @@ def post(self): class StatusEndpoint(Resource): def get(self, processing_id): - response = { - "processing_id": processing_id, - "message": "", - "state": 500 - } + response = {"processing_id": processing_id, "message": "", "state": 500} try: task = running_transcriptions[processing_id] if task.done(): callbackresponse = task.result() - response['message'] = callbackresponse['message'] - response['state'] = callbackresponse['state'] + response["message"] = callbackresponse["message"] + response["state"] = callbackresponse["state"] # TODO: Add information: whereabouts of the processing result! # NB: need to adjust src/main_data_processor.py if task.cancelled() or task.cancelling(): - response['message'] = "Transcription was cancelled" - response['state'] = 204 + response["message"] = "Transcription was cancelled" + response["state"] = 204 else: # other cases True except KeyError: - response['message'] = f"Processing id {processing_id} Unknown" - response['state'] = 404 + response["message"] = f"Processing id {processing_id} Unknown" + response["state"] = 404 return response def delete(self, processing_id): diff --git a/worker.py b/worker.py deleted file mode 100644 index 4c198a5..0000000 --- a/worker.py +++ /dev/null @@ -1,177 +0,0 @@ -import logging -import sys -import os -from src.base_util import validate_config -from dane import Document, Task, Result -from dane.base_classes import base_worker -from dane.config import cfg -from dane.provenance import Provenance -from src.models import CallbackResponse -from src.io_util import ( - fetch_input_s3_uri, - source_id_from_s3_uri, - get_s3_output_file_uri, -) -from pika.exceptions import ChannelClosedByBroker # type: ignore -import src.main_data_processor as main_data_processor - - -logger = logging.getLogger() - - -class WhisperASRWorker(base_worker): - def __init__(self, config): - logger.info(config) - self.UNIT_TESTING = os.getenv("DW_WHISPER_ASR_UNIT_TESTING", False) - - if not validate_config(config, not self.UNIT_TESTING): - logger.error("Invalid config, quitting") - sys.exit() - - self.__queue_name = "WHISPER_ASR" - self.__binding_key = "#.WHISPER_ASR" - self.__depends_on = ( - list(config.DANE_DEPENDENCIES) if "DANE_DEPENDENCIES" in config else [] - ) - - super().__init__( - self.__queue_name, - self.__binding_key, - config, - self.__depends_on, - auto_connect=not self.UNIT_TESTING, - no_api=self.UNIT_TESTING, - ) - - # NOTE: cannot be automatically filled, because no git client is present - if not self.generator: - logger.info("Generator was None, creating it now") - self.generator = { - "id": "dane-whisper-asr-worker", - "type": "dane-whisper-asr-worker", - "name": "ASR using Whisper", - "homepage": "https://github.com/beeldengeluid/dane-whisper-asr-worker", - } - - """----------------------------------INTERACTION WITH DANE SERVER ---------------------------------""" - - # DANE callback function, called whenever there is a job for this worker - def callback(self, task: Task, doc: Document) -> CallbackResponse: - logger.info("Receiving a task from the DANE server!") - logger.info(task) - logger.info(doc) - - # fetch s3 uri of input data: - s3_uri = fetch_input_s3_uri(self.handler, doc) - - # now run the main process! - processing_result, full_provenance_chain = main_data_processor.run(s3_uri) - - # if results are fine, save something to the DANE index - if processing_result.get("state", 500) == 200: - logger.info( - "applying IO on output went well, now finally saving to DANE index" - ) - self.save_to_dane_index( - doc, - task, - get_s3_output_file_uri(source_id_from_s3_uri(s3_uri)), - provenance=full_provenance_chain, - ) - return processing_result - - def save_to_dane_index( - self, - doc: Document, - task: Task, - s3_location: str, - provenance: Provenance, - ) -> None: - logger.info("saving results to DANE, task id={0}".format(task._id)) - r = Result( - self.generator, - payload={ - "doc_id": doc._id, - "task_id": task._id if task else None, - "doc_target_id": doc.target["id"], - "doc_target_url": doc.target["url"], - "s3_location": s3_location, - "provenance": provenance.to_json(), - }, - api=self.handler, - ) - r.save(task._id) - - -# Start the worker -# passing --run-test-file will run the whole process on the files in cfg.INPUT.TEST_FILES -if __name__ == "__main__": - from argparse import ArgumentParser - import json - from base_util import LOG_FORMAT - - # first read the CLI arguments - parser = ArgumentParser(description="dane-whisper-asr-worker") - parser.add_argument( - "--run-test-file", action="store", dest="run_test_file", default="n", nargs="?" - ) - parser.add_argument("--log", action="store", dest="loglevel", default="INFO") - args = parser.parse_args() - - # initialises the root logger - logging.basicConfig( - stream=sys.stdout, # configure a stream handler only for now (single handler) - format=LOG_FORMAT, - ) - - # setting the loglevel - log_level = args.loglevel.upper() - logger.setLevel(log_level) - logger.info(f"Logger initialized (log level: {log_level})") - logger.info(f"Got the following CMD line arguments: {args}") - - # see if the test file must be run - if args.run_test_file != "n": - logger.info("Running feature extraction with INPUT.TEST_INPUT_PATH ") - if cfg.INPUT.TEST_INPUT_PATH: - if ( - "s3" in cfg.INPUT.TEST_INPUT_PATH - or "https" in cfg.INPUT.TEST_INPUT_PATH - ): - path = cfg.INPUT.TEST_INPUT_PATH - else: - path = os.path.join( - cfg.FILE_SYSTEM.BASE_MOUNT, - cfg.FILE_SYSTEM.INPUT_DIR, - cfg.INPUT.TEST_INPUT_PATH, - ) - processing_result, full_provenance_chain = main_data_processor.run(path) - logger.info("Results after applying desired I/O") - logger.info(processing_result) - logger.info("Full provenance chain") - logger.info( - json.dumps(full_provenance_chain.to_json(), indent=4, sort_keys=True) - if full_provenance_chain - else None - ) - else: - logger.error("Please configure an input file in INPUT.TEST_INPUT_FILE") - sys.exit() - else: - logger.info("Starting the worker") - # start the worker - w = WhisperASRWorker(cfg) - try: - w.run() - except ChannelClosedByBroker: - """ - (406, 'PRECONDITION_FAILED - delivery acknowledgement on channel 1 timed out. - Timeout value used: 1800000 ms. - This timeout value can be configured, see consumers doc guide to learn more') - """ - logger.critical( - "Please increase the consumer_timeout in your RabbitMQ server" - ) - w.stop() - except (KeyboardInterrupt, SystemExit): - w.stop() From db33f9eea7f4d3a798608d0dfd76bcddae260c80 Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Mon, 23 Sep 2024 16:23:07 +0200 Subject: [PATCH 19/54] now it also runs; --- apis/__init__.py | 8 +++ whisper_api.py => apis/whisper_api.py | 26 ++++----- app/__init__.py | 82 ++++++++++++++++++++------- poetry.lock | 16 +++++- pyproject.toml | 5 +- 5 files changed, 101 insertions(+), 36 deletions(-) create mode 100644 apis/__init__.py rename whisper_api.py => apis/whisper_api.py (84%) diff --git a/apis/__init__.py b/apis/__init__.py new file mode 100644 index 0000000..53a8da2 --- /dev/null +++ b/apis/__init__.py @@ -0,0 +1,8 @@ +from flask_restx import Api +from apis.whisper_api import api as transcribe_api + +apiVersion = "v1.0" +basePath = "/api" +api = Api(version=apiVersion) + +api.add_namespace(transcribe_api, path="%s/transcribe" % basePath) diff --git a/whisper_api.py b/apis/whisper_api.py similarity index 84% rename from whisper_api.py rename to apis/whisper_api.py index 8a1c3b8..f0dec63 100644 --- a/whisper_api.py +++ b/apis/whisper_api.py @@ -1,30 +1,26 @@ from flask import request, url_for -from flask_restx import Api, Namespace, Resource # type: ignore +from flask_restx import Namespace, Resource +import logging import asyncio from time import time from asr import run -running_transcriptions: dict[str, asyncio.Task] = {} - -apiVersion = "v1.1" -basePath = "/api/%s" % apiVersion -api = Api(version=apiVersion) - -transcribe_api = Namespace("Transcribe", description="Transcribe audio file") - -transcribe_request = api.model( - "TranscribeRequest", - {"doc_id": "this_is_not_a_valid_id", "location": "this_is_not_a_valid_S3_URI"}, -) +api = Namespace("Transcribe", description="Transcribe audio file") +logger = logging.getLogger(f"transcribe.{__name__}") +running_transcriptions: dict[str, asyncio.Task] = {} -api.add_namespace(transcribe_api, path="%s/transcribe" % basePath) +# FIXME this model is not correct. Swagger cannot render this +# transcribe_request = api.model( +# "TranscribeRequest", +# {"doc_id": "this_is_not_a_valid_id", "location": "this_is_not_a_valid_S3_URI"}, +# ) @api.route("/transcribe", endpoint="Request new audio file transcription") class TranscriptionEndpoint(Resource): - @api.expect(transcribe_request) + # @api.expect(transcribe_request) def post(self): params = request.get_json(force=True) diff --git a/app/__init__.py b/app/__init__.py index 148d658..cfb371b 100644 --- a/app/__init__.py +++ b/app/__init__.py @@ -1,31 +1,75 @@ from flask import Flask -from whisper_api import api -from flask import url_for, send_from_directory +from logging.config import dictConfig +from apis import api + +# from flask import url_for +from flask_cors import CORS + +# from flask_restx import Api as rpapi from health_check import HealthCheckProxy +from base_util import LOG_FORMAT + + +dictConfig( + { + "version": 1, + "formatters": { + "default": { + "format": LOG_FORMAT, + } + }, + "handlers": { + "wsgi": { + "class": "logging.StreamHandler", + "stream": "ext://flask.logging.wsgi_errors_stream", + "formatter": "default", + }, + }, + "loggers": { + "transcribe": { # root logger + "handlers": ["wsgi"], + "level": "DEBUG", + "propagate": False, + }, + "__main__": { # if __name__ == "__main__" + "handlers": ["wsgi"], + "level": "DEBUG", + "propagate": False, + }, + }, + } +) def create_app(): - service = Flask("transcribe") - service.config["DEBUG"] = True - # CORS(service) + app = Flask("transcribe") - service.logger.info("initializing api") + # Set Flask-specific config variables (from cfg) + app.config["DEBUG"] = True + app.config["CORS_HEADERS"] = "Content-Type" + app.config["RESTPLUS_VALIDATE"] = False + + CORS(app) + + app.logger.info("initializing api") api.init_app( - service, - title="Beeld en Geluid Transcription API", - description="Transcribe an audio file using Whisper ASR", + app, + title="Beeld en Geluid Annotation API", + description="Annotation API that (mostly) follows the W3C Web Annotation Model", ) - @property # type: ignore - def specs_url(self): - service.logger.debug("Entered function") - return url_for(self.endpoint("specs"), _external=True, _scheme="https") + app.logger.info("Initialising server (once)...") + + # making sure the swagger UI shows correctly on HTTPS/HTTP + # @property # type: ignore + # def specs_url(self): + # app.logger.debug("Swagger specs_url handling") + # return url_for(self.endpoint("specs"), _external=True, _scheme="https") - @service.route("/robots.txt") - def static_from_root(): - return send_from_directory(service.static_folder, "robots.txt") + # if "FORCE_SWAGGER_JSON_HTTPS" in cfg and cfg["FORCE_SWAGGER_JSON_HTTPS"]: + # rpapi.specs_url = specs_url - # wires up the ping and ready check - HealthCheckProxy(service) + # wire up the ping and ready checks + HealthCheckProxy(app) - return service + return app diff --git a/poetry.lock b/poetry.lock index cc53eb7..b59cab6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -658,6 +658,20 @@ Werkzeug = ">=3.0.0" async = ["asgiref (>=3.2)"] dotenv = ["python-dotenv"] +[[package]] +name = "flask-cors" +version = "5.0.0" +description = "A Flask extension adding a decorator for CORS support" +optional = false +python-versions = "*" +files = [ + {file = "Flask_Cors-5.0.0-py2.py3-none-any.whl", hash = "sha256:b9e307d082a9261c100d8fb0ba909eec6a228ed1b60a8315fd85f783d61910bc"}, + {file = "flask_cors-5.0.0.tar.gz", hash = "sha256:5aadb4b950c4e93745034594d9f3ea6591f734bb3662e16e255ffbf5e89c88ef"}, +] + +[package.dependencies] +Flask = ">=0.9" + [[package]] name = "flask-restx" version = "1.3.0" @@ -1902,4 +1916,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.11" -content-hash = "09fd9f99be47cbabef3e2802350d804b0f2fd4050b50231247d35353616035bb" +content-hash = "a0ad94f543f67daf48ed425400deb3b68aa403d8556b0143689be08d88065b4b" diff --git a/pyproject.toml b/pyproject.toml index 31b6f07..963a3a0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,6 +13,7 @@ faster-whisper = "^1.0.1" validators = "^0.33.0" boto3 = "^1.35.10" flask-restx = "^1.3.0" +flask-cors = "^5.0.0" [tool.poetry.group.dev.dependencies] moto = "^5.0.13" @@ -74,6 +75,8 @@ exclude = "misc" module = [ 'yaml', 'faster_whisper.*', - 'boto3.*' + 'boto3.*', + "flask_restx", + "flask_cors" ] ignore_missing_imports = true From 27fc9e5fbb9483ce7159145e5a0ba087988c0c19 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 23 Sep 2024 17:00:51 +0200 Subject: [PATCH 20/54] Updated title and description for API --- app/__init__.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/app/__init__.py b/app/__init__.py index cfb371b..e75c373 100644 --- a/app/__init__.py +++ b/app/__init__.py @@ -54,8 +54,8 @@ def create_app(): app.logger.info("initializing api") api.init_app( app, - title="Beeld en Geluid Annotation API", - description="Annotation API that (mostly) follows the W3C Web Annotation Model", + title="Beeld en Geluid transcription API", + description="Transcription API that uses Whisper for transcribing speech", ) app.logger.info("Initialising server (once)...") From b40cf6344c25eb16d292c0d7e3f6b49127440781 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Mon, 23 Sep 2024 17:01:11 +0200 Subject: [PATCH 21/54] Actually run service --- server.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/server.py b/server.py index 15e9ffa..47f3800 100644 --- a/server.py +++ b/server.py @@ -3,3 +3,7 @@ # NOTE this file SHOULD make it backwards compatible with the existing supervisord config # run this with: uwsgi --http 127.0.0.1:5304 --master -p 4 -w server:app service = create_app() + + +if __name__ == '__main__': + service.run(debug=True) From d6b21a82417784714b58ea5b8464169a066652bd Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Tue, 24 Sep 2024 10:55:58 +0200 Subject: [PATCH 22/54] Fixed api model --- apis/whisper_api.py | 15 +++++++++------ 1 file changed, 9 insertions(+), 6 deletions(-) diff --git a/apis/whisper_api.py b/apis/whisper_api.py index f0dec63..c64349a 100644 --- a/apis/whisper_api.py +++ b/apis/whisper_api.py @@ -1,5 +1,5 @@ from flask import request, url_for -from flask_restx import Namespace, Resource +from flask_restx import Namespace, Resource, fields import logging import asyncio from time import time @@ -12,15 +12,18 @@ running_transcriptions: dict[str, asyncio.Task] = {} # FIXME this model is not correct. Swagger cannot render this -# transcribe_request = api.model( -# "TranscribeRequest", -# {"doc_id": "this_is_not_a_valid_id", "location": "this_is_not_a_valid_S3_URI"}, -# ) +transcribe_request = api.model( + name="TranscribeRequest", + model={ + "doc_id": fields.String, + "location": fields.String + }, +) @api.route("/transcribe", endpoint="Request new audio file transcription") class TranscriptionEndpoint(Resource): - # @api.expect(transcribe_request) + @api.marshal_with(transcribe_request) def post(self): params = request.get_json(force=True) From 0fffc15916a03eef11cc28072184cd7977d16d73 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Tue, 24 Sep 2024 11:01:54 +0200 Subject: [PATCH 23/54] Request works, now start debugging the function --- apis/whisper_api.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/apis/whisper_api.py b/apis/whisper_api.py index c64349a..940c4e2 100644 --- a/apis/whisper_api.py +++ b/apis/whisper_api.py @@ -23,7 +23,7 @@ @api.route("/transcribe", endpoint="Request new audio file transcription") class TranscriptionEndpoint(Resource): - @api.marshal_with(transcribe_request) + @api.expect(transcribe_request) def post(self): params = request.get_json(force=True) From bf95c7f083b609da0109f33c0391c1ab773ced29 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Tue, 24 Sep 2024 15:58:39 +0200 Subject: [PATCH 24/54] Remove unnecessary prefix from path --- apis/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/apis/__init__.py b/apis/__init__.py index 53a8da2..b841315 100644 --- a/apis/__init__.py +++ b/apis/__init__.py @@ -5,4 +5,4 @@ basePath = "/api" api = Api(version=apiVersion) -api.add_namespace(transcribe_api, path="%s/transcribe" % basePath) +api.add_namespace(transcribe_api, path="%s" % basePath) From ab6cdd3d572999de0cc9472f2edd97af8c397f8a Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Tue, 24 Sep 2024 15:59:17 +0200 Subject: [PATCH 25/54] Wired up API, figuring out how to start async processing now --- apis/whisper_api.py | 68 ++++++++++++++++++++++++++++++++------------- 1 file changed, 49 insertions(+), 19 deletions(-) diff --git a/apis/whisper_api.py b/apis/whisper_api.py index 940c4e2..e6dad3d 100644 --- a/apis/whisper_api.py +++ b/apis/whisper_api.py @@ -2,11 +2,11 @@ from flask_restx import Namespace, Resource, fields import logging import asyncio -from time import time +from time import time, sleep from asr import run -api = Namespace("Transcribe", description="Transcribe audio file") +api = Namespace("ASR", description="Transcribe audio file") logger = logging.getLogger(f"transcribe.{__name__}") running_transcriptions: dict[str, asyncio.Task] = {} @@ -21,35 +21,62 @@ ) -@api.route("/transcribe", endpoint="Request new audio file transcription") +def dummy_task(sec=60): + logger.info(f"I'm going to sleep for {sec} seconds") + sleep(60) + logger.info("Just woke op") + +@api.route("/transcribe")#, endpoint="Request new audio file transcription") class TranscriptionEndpoint(Resource): @api.expect(transcribe_request) def post(self): params = request.get_json(force=True) # if busy processing something else: refuse - task = asyncio.current_task() - if task is not None: - return {"status": 503, "message": "Busy on another transcription"} + import pdb + #pdb.set_trace() + try: + task = asyncio.current_task() + if task is not None: + return {"status": 503, "message": "Busy on another transcription"} + logger.debug(f"Currently processing {task}") + except RuntimeError: + logger.debug("No running event loop") + pass # if available: spin up processing document_id = params["doc_id"] - processing_id = document_id + str(time) - task = asyncio.create_task( - run( - input_uri=params["location"], output_uri="TODO" - ) # TODO determine output_uri - ) - running_transcriptions[processing_id] = task + processing_id = document_id + str(time()) + #pdb.set_trace() + + logger.info(f"Going to start a new task for {document_id}") + asyncio.run(self.start_task( + document_id=document_id, + input_uri=params["location"], + processing_id=processing_id + )) + logger.info(f"Started processing for {document_id}") + response = { "processing_id": processing_id, - "status_handler": url_for(StatusEndpoint, processing_id), + "status_handler": url_for('ASR_status_endpoint', processing_id=processing_id), "message": f"Transciption task created for document {document_id}.", - "status": 201, + "state": 201, } - return response + return response, response['state'] + + async def start_task(self, document_id, input_uri, processing_id): + loop = asyncio.get_event_loop() + loop.run_until_complete(dummy_task(60)) + task = asyncio.create_task( + dummy_task(60) + # run( + # input_uri=input_uri, output_uri="TODO" + # ) # TODO determine output_uri + ) + running_transcriptions[processing_id] = task -@api.route("/tasks/", endpoint="Audio file transcription Task") +@api.route("/task/") class StatusEndpoint(Resource): def get(self, processing_id): @@ -67,11 +94,14 @@ def get(self, processing_id): response["state"] = 204 else: # other cases + logger.info("What is the case here?!") True except KeyError: response["message"] = f"Processing id {processing_id} Unknown" + import pdb + pdb.set_trace() response["state"] = 404 - return response + return response, response['state'] def delete(self, processing_id): try: @@ -86,4 +116,4 @@ def delete(self, processing_id): "message": f"Processing id Unknown: {processing_id}", "state": 404, } - return response + return response, response['state'] From dd0fab73db3b4383ec030aee4e62de432ecca682 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Tue, 24 Sep 2024 16:02:39 +0200 Subject: [PATCH 26/54] Last attempt --- apis/whisper_api.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/apis/whisper_api.py b/apis/whisper_api.py index e6dad3d..5d601e0 100644 --- a/apis/whisper_api.py +++ b/apis/whisper_api.py @@ -66,8 +66,7 @@ def post(self): async def start_task(self, document_id, input_uri, processing_id): loop = asyncio.get_event_loop() - loop.run_until_complete(dummy_task(60)) - task = asyncio.create_task( + loop.create_task( dummy_task(60) # run( # input_uri=input_uri, output_uri="TODO" From 40b80f2e50a17c08eec33d4e8a457dd73dddb76c Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 25 Sep 2024 09:41:08 +0200 Subject: [PATCH 27/54] migrated to fastapi, which has a BackGroundTasks mechanism built in --- apis/__init__.py | 8 - apis/whisper_api.py | 118 ----------- app/__init__.py | 75 ------- download.py | 3 + poetry.lock | 473 +++++++++++++++++++++----------------------- pyproject.toml | 5 +- scripts/run-api.sh | 2 +- server.py | 9 - 8 files changed, 227 insertions(+), 466 deletions(-) delete mode 100644 apis/__init__.py delete mode 100644 apis/whisper_api.py delete mode 100644 app/__init__.py delete mode 100644 server.py diff --git a/apis/__init__.py b/apis/__init__.py deleted file mode 100644 index b841315..0000000 --- a/apis/__init__.py +++ /dev/null @@ -1,8 +0,0 @@ -from flask_restx import Api -from apis.whisper_api import api as transcribe_api - -apiVersion = "v1.0" -basePath = "/api" -api = Api(version=apiVersion) - -api.add_namespace(transcribe_api, path="%s" % basePath) diff --git a/apis/whisper_api.py b/apis/whisper_api.py deleted file mode 100644 index 5d601e0..0000000 --- a/apis/whisper_api.py +++ /dev/null @@ -1,118 +0,0 @@ -from flask import request, url_for -from flask_restx import Namespace, Resource, fields -import logging -import asyncio -from time import time, sleep -from asr import run - - -api = Namespace("ASR", description="Transcribe audio file") -logger = logging.getLogger(f"transcribe.{__name__}") - -running_transcriptions: dict[str, asyncio.Task] = {} - -# FIXME this model is not correct. Swagger cannot render this -transcribe_request = api.model( - name="TranscribeRequest", - model={ - "doc_id": fields.String, - "location": fields.String - }, -) - - -def dummy_task(sec=60): - logger.info(f"I'm going to sleep for {sec} seconds") - sleep(60) - logger.info("Just woke op") - -@api.route("/transcribe")#, endpoint="Request new audio file transcription") -class TranscriptionEndpoint(Resource): - @api.expect(transcribe_request) - def post(self): - params = request.get_json(force=True) - - # if busy processing something else: refuse - import pdb - #pdb.set_trace() - try: - task = asyncio.current_task() - if task is not None: - return {"status": 503, "message": "Busy on another transcription"} - logger.debug(f"Currently processing {task}") - except RuntimeError: - logger.debug("No running event loop") - pass - # if available: spin up processing - document_id = params["doc_id"] - processing_id = document_id + str(time()) - #pdb.set_trace() - - logger.info(f"Going to start a new task for {document_id}") - asyncio.run(self.start_task( - document_id=document_id, - input_uri=params["location"], - processing_id=processing_id - )) - logger.info(f"Started processing for {document_id}") - - response = { - "processing_id": processing_id, - "status_handler": url_for('ASR_status_endpoint', processing_id=processing_id), - "message": f"Transciption task created for document {document_id}.", - "state": 201, - } - return response, response['state'] - - async def start_task(self, document_id, input_uri, processing_id): - loop = asyncio.get_event_loop() - loop.create_task( - dummy_task(60) - # run( - # input_uri=input_uri, output_uri="TODO" - # ) # TODO determine output_uri - ) - running_transcriptions[processing_id] = task - - -@api.route("/task/") -class StatusEndpoint(Resource): - - def get(self, processing_id): - response = {"processing_id": processing_id, "message": "", "state": 500} - try: - task = running_transcriptions[processing_id] - if task.done(): - callbackresponse = task.result() - response["message"] = callbackresponse["message"] - response["state"] = callbackresponse["state"] - # TODO: Add information: whereabouts of the processing result! - # NB: need to adjust src/main_data_processor.py - if task.cancelled() or task.cancelling(): - response["message"] = "Transcription was cancelled" - response["state"] = 204 - else: - # other cases - logger.info("What is the case here?!") - True - except KeyError: - response["message"] = f"Processing id {processing_id} Unknown" - import pdb - pdb.set_trace() - response["state"] = 404 - return response, response['state'] - - def delete(self, processing_id): - try: - task = running_transcriptions[processing_id] - task.cancel() - response = { - "message": f"Cancelled processing of {processing_id}", - "state": 202, - } - except KeyError: - response = { - "message": f"Processing id Unknown: {processing_id}", - "state": 404, - } - return response, response['state'] diff --git a/app/__init__.py b/app/__init__.py deleted file mode 100644 index e75c373..0000000 --- a/app/__init__.py +++ /dev/null @@ -1,75 +0,0 @@ -from flask import Flask -from logging.config import dictConfig -from apis import api - -# from flask import url_for -from flask_cors import CORS - -# from flask_restx import Api as rpapi -from health_check import HealthCheckProxy -from base_util import LOG_FORMAT - - -dictConfig( - { - "version": 1, - "formatters": { - "default": { - "format": LOG_FORMAT, - } - }, - "handlers": { - "wsgi": { - "class": "logging.StreamHandler", - "stream": "ext://flask.logging.wsgi_errors_stream", - "formatter": "default", - }, - }, - "loggers": { - "transcribe": { # root logger - "handlers": ["wsgi"], - "level": "DEBUG", - "propagate": False, - }, - "__main__": { # if __name__ == "__main__" - "handlers": ["wsgi"], - "level": "DEBUG", - "propagate": False, - }, - }, - } -) - - -def create_app(): - app = Flask("transcribe") - - # Set Flask-specific config variables (from cfg) - app.config["DEBUG"] = True - app.config["CORS_HEADERS"] = "Content-Type" - app.config["RESTPLUS_VALIDATE"] = False - - CORS(app) - - app.logger.info("initializing api") - api.init_app( - app, - title="Beeld en Geluid transcription API", - description="Transcription API that uses Whisper for transcribing speech", - ) - - app.logger.info("Initialising server (once)...") - - # making sure the swagger UI shows correctly on HTTPS/HTTP - # @property # type: ignore - # def specs_url(self): - # app.logger.debug("Swagger specs_url handling") - # return url_for(self.endpoint("specs"), _external=True, _scheme="https") - - # if "FORCE_SWAGGER_JSON_HTTPS" in cfg and cfg["FORCE_SWAGGER_JSON_HTTPS"]: - # rpapi.specs_url = specs_url - - # wire up the ping and ready checks - HealthCheckProxy(app) - - return app diff --git a/download.py b/download.py index ebbef59..473ae07 100644 --- a/download.py +++ b/download.py @@ -47,6 +47,9 @@ def http_download(url: str) -> Optional[DownloadResult]: os.makedirs(input_file_dir) with open(input_file, "wb") as file: response = requests.get(url) + if response.status_code >= 400: + logger.error(f"Could not download url: {response.status_code}") + return None file.write(response.content) file.close() download_time = (time.time() - start_time) * 1000 # time in ms diff --git a/poetry.lock b/poetry.lock index b59cab6..58232e9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,37 +1,35 @@ # This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] -name = "aniso8601" -version = "9.0.1" -description = "A library for parsing ISO 8601 strings." +name = "annotated-types" +version = "0.7.0" +description = "Reusable constraint types to use with typing.Annotated" optional = false -python-versions = "*" +python-versions = ">=3.8" files = [ - {file = "aniso8601-9.0.1-py2.py3-none-any.whl", hash = "sha256:1d2b7ef82963909e93c4f24ce48d4de9e66009a21bf1c1e1c85bdd0812fe412f"}, - {file = "aniso8601-9.0.1.tar.gz", hash = "sha256:72e3117667eedf66951bb2d93f4296a56b94b078a8a95905a052611fb3f1b973"}, + {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, + {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, ] -[package.extras] -dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"] - [[package]] -name = "attrs" -version = "24.2.0" -description = "Classes Without 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+python-versions = ">=3.7" +files = [ + {file = "sniffio-1.3.1-py3-none-any.whl", hash = "sha256:2f6da418d1f1e0fddd844478f41680e794e6051915791a034ff65e5f100525a2"}, + {file = "sniffio-1.3.1.tar.gz", hash = "sha256:f4324edc670a0f49750a81b895f35c3adb843cca46f0530f79fc1babb23789dc"}, +] + +[[package]] +name = "starlette" +version = "0.38.6" +description = "The little ASGI library that shines." +optional = false +python-versions = ">=3.8" +files = [ + {file = "starlette-0.38.6-py3-none-any.whl", hash = "sha256:4517a1409e2e73ee4951214ba012052b9e16f60e90d73cfb06192c19203bbb05"}, + {file = "starlette-0.38.6.tar.gz", hash = "sha256:863a1588f5574e70a821dadefb41e4881ea451a47a3cd1b4df359d4ffefe5ead"}, +] + +[package.dependencies] +anyio = ">=3.4.0,<5" + +[package.extras] +full = ["httpx (>=0.22.0)", "itsdangerous", "jinja2", "python-multipart (>=0.0.7)", "pyyaml"] + [[package]] name = "sympy" version = "1.13.3" @@ -1871,6 +1822,24 @@ h2 = ["h2 (>=4,<5)"] socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] zstd = ["zstandard (>=0.18.0)"] +[[package]] +name = "uvicorn" +version = "0.30.6" +description = "The lightning-fast ASGI server." +optional = false +python-versions = ">=3.8" +files = [ + {file = "uvicorn-0.30.6-py3-none-any.whl", hash = "sha256:65fd46fe3fda5bdc1b03b94eb634923ff18cd35b2f084813ea79d1f103f711b5"}, + {file = "uvicorn-0.30.6.tar.gz", hash = "sha256:4b15decdda1e72be08209e860a1e10e92439ad5b97cf44cc945fcbee66fc5788"}, +] + +[package.dependencies] +click = ">=7.0" +h11 = ">=0.8" + +[package.extras] +standard = ["colorama (>=0.4)", "httptools (>=0.5.0)", "python-dotenv (>=0.13)", "pyyaml (>=5.1)", "uvloop (>=0.14.0,!=0.15.0,!=0.15.1)", "watchfiles (>=0.13)", "websockets (>=10.4)"] + [[package]] name = "validators" version = "0.33.0" @@ -1916,4 +1885,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.11" -content-hash = "a0ad94f543f67daf48ed425400deb3b68aa403d8556b0143689be08d88065b4b" +content-hash = "42ea278bed0d6ef83b60e61b4d648984a6c31113b682c3b79f6a2d5517660c7e" diff --git a/pyproject.toml b/pyproject.toml index 963a3a0..7294fa3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,8 +12,8 @@ python = "^3.11" faster-whisper = "^1.0.1" validators = "^0.33.0" boto3 = "^1.35.10" -flask-restx = "^1.3.0" -flask-cors = "^5.0.0" +fastapi = "^0.115.0" +uvicorn = "^0.30.6" [tool.poetry.group.dev.dependencies] moto = "^5.0.13" @@ -29,7 +29,6 @@ optional = true [tool.poetry.group.service.dependencies] flask = "^3.0.3" -flask-restx = "^1.3.0" [build-system] requires = ["poetry-core"] diff --git a/scripts/run-api.sh b/scripts/run-api.sh index 0cdc6cd..3e086c4 100755 --- a/scripts/run-api.sh +++ b/scripts/run-api.sh @@ -23,4 +23,4 @@ fi cd "$SCRIPTPATH/.." -flask --app app run --debug -p $PORT +poetry run python whisper_api.py diff --git a/server.py b/server.py deleted file mode 100644 index 47f3800..0000000 --- a/server.py +++ /dev/null @@ -1,9 +0,0 @@ -from app import create_app - -# NOTE this file SHOULD make it backwards compatible with the existing supervisord config -# run this with: uwsgi --http 127.0.0.1:5304 --master -p 4 -w server:app -service = create_app() - - -if __name__ == '__main__': - service.run(debug=True) From 2ae6af444d6e01699a590716abce3d461b77ccf0 Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 25 Sep 2024 09:56:06 +0200 Subject: [PATCH 28/54] readded oddily deleted whisper_api.py --- whisper_api.py | 50 ++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) create mode 100644 whisper_api.py diff --git a/whisper_api.py b/whisper_api.py new file mode 100644 index 0000000..5b2eede --- /dev/null +++ b/whisper_api.py @@ -0,0 +1,50 @@ +import logging +from uuid import uuid4 +from fastapi import BackgroundTasks, FastAPI +from asr import run + +# from typing import Optional +from pydantic import BaseModel +from base_util import LOG_FORMAT + +logger = logging.getLogger(__name__) +api = FastAPI() + + +class Task(BaseModel): + input_uri: str + output_uri: str + id: str | None = None + + +all_tasks = [] + + +def try_whisper(task: Task): + logger.info(f"Trying to call Whisper for task {task.id}") + try: + run(task.input_uri, task.output_uri) + except Exception: + logger.exception("Failed to run whisper") + logger.info(f"Successfully ran Whisper for task {task.id}") + + +@api.post("/tasks") +async def create_task(task: Task, background_tasks: BackgroundTasks): + background_tasks.add_task(try_whisper, task) + task.id = str(uuid4()) + task_dict = task.dict() + all_tasks.append(task_dict) + return {"data": task_dict, "msg": "Successfully added task", "task_id": task.id} + + +if __name__ == "__main__": + import sys + import uvicorn + + logging.basicConfig( + stream=sys.stdout, + level="INFO", + format=LOG_FORMAT, + ) + uvicorn.run(api, port=8081, host="0.0.0.0") From 713dfc5649792e3bfc49b4ad1058ad1f944ebcd8 Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 25 Sep 2024 10:15:35 +0200 Subject: [PATCH 29/54] moved code back in --- whisper_api.py | 68 +++++++++++++++++++++++++++++++++++++++++++++++--- 1 file changed, 64 insertions(+), 4 deletions(-) diff --git a/whisper_api.py b/whisper_api.py index 5b2eede..99b8d63 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -1,9 +1,9 @@ import logging from uuid import uuid4 -from fastapi import BackgroundTasks, FastAPI +from fastapi import BackgroundTasks, FastAPI, HTTPException, status from asr import run -# from typing import Optional +from typing import Optional from pydantic import BaseModel from base_util import LOG_FORMAT @@ -15,9 +15,37 @@ class Task(BaseModel): input_uri: str output_uri: str id: str | None = None + status: str | None = None -all_tasks = [] +all_tasks = [ + { + "input_uri": "http://modelhosting.beng.nl/whisper-asr.mp3", + "output_uri": "http://modelhosting.beng.nl/assets/whisper-asr", + "id": "test1", + } +] + + +def get_task_by_id(task_id: str) -> Optional[dict]: + tasks_with_id = list(filter(lambda t: t.get("id", "") == task_id, all_tasks)) + return tasks_with_id[0] if tasks_with_id else None + + +def get_task_index(task_id: str) -> int: + for index, task in enumerate(all_tasks): + if task.get("id", "") == task_id: + return index + return -1 + + +# delete after processing is done or if client calls for it +def delete_task(task_id) -> bool: + task_index = get_task_index(task_id) + if task_index == -1: + return False + del all_tasks[task_index] + return True def try_whisper(task: Task): @@ -29,7 +57,12 @@ def try_whisper(task: Task): logger.info(f"Successfully ran Whisper for task {task.id}") -@api.post("/tasks") +@api.get("/tasks") +def get_all_tasks(): + return {"data": all_tasks} + + +@api.post("/tasks", status_code=status.HTTP_201_CREATED) async def create_task(task: Task, background_tasks: BackgroundTasks): background_tasks.add_task(try_whisper, task) task.id = str(uuid4()) @@ -38,6 +71,33 @@ async def create_task(task: Task, background_tasks: BackgroundTasks): return {"data": task_dict, "msg": "Successfully added task", "task_id": task.id} +@api.get("/tasks/{task_id}") +async def get_task(task_id: str): + task = get_task_by_id(task_id) + if not task: + raise HTTPException( + status_code=status.HTTP_404_NOT_FOUND, detail=f"Task {task_id} not found" + ) + return {"data": task} + + +@api.delete("/tasks/{task_id}") +async def remove_task(task_id: str): + success = delete_task(task_id) + if not success: + raise HTTPException( + status_code=status.HTTP_404_NOT_FOUND, detail=f"Task {task_id} not found" + ) + return { + "msg": ( + f"Successfully deleted task {task_id}" + if success + else f"Failed to delete task {task_id}" + ), + "task_id": task_id, + } + + if __name__ == "__main__": import sys import uvicorn From a57752446ab5a52cdb20f8ddff6850c2db90fed2 Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 25 Sep 2024 10:28:22 +0200 Subject: [PATCH 30/54] added Status; added ping; removed old health_check endpoint --- health_check.py | 56 ------------------------------------------------- whisper_api.py | 30 ++++++++++++++++++++++---- 2 files changed, 26 insertions(+), 60 deletions(-) delete mode 100644 health_check.py diff --git a/health_check.py b/health_check.py deleted file mode 100644 index 0fc7c1c..0000000 --- a/health_check.py +++ /dev/null @@ -1,56 +0,0 @@ -import logging -import json -from typing import Dict, Any -from flask import Response -import requests - - -logger = logging.getLogger(f"search.{__name__}") - - -class HealthCheckProxy: - def __init__(self, service): - self.service = service - self.service.add_url_rule("/ping", view_func=self.ping, methods=["GET"]) - self.service.add_url_rule("/ready", view_func=self.ready, methods=["GET"]) - - def ping(self) -> Response: - logger.debug("Received ping") - return Response("pong", mimetype="text/plain") - - def ready(self) -> Response: - logger.debug("Checking availability all external connections") - - connections: dict[str, Dict[str, Any]] = {} - logger.info(connections) - - return self.check_connections(connections) - - def check_connections(self, connections: Dict[str, Dict[str, Any]]) -> Response: - logger.info("Checking the following connections") - logger.debug(connections) - overall_status = 200 - for c in connections.values(): - logger.debug(c) - try: - c["statusCode"] = requests.get( - c["connectionUrl"], verify=False, timeout=5 - ).status_code - except Exception as e: - logger.exception( - f"Unhandled ready check error for {c['connectionUrl']}" - ) - c["error"] = str(e) - c["statusCode"] = 502 - - if c["statusCode"] < 200 or c["statusCode"] >= 300: - logger.error( - f"Connection {c['connectionUrl']} failed with {c['statusCode']}" - ) - overall_status = 502 - - return Response( - json.dumps({"status": overall_status}, indent=4, sort_keys=True), - overall_status, - mimetype="application/json", - ) diff --git a/whisper_api.py b/whisper_api.py index 99b8d63..4e981b4 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -2,7 +2,7 @@ from uuid import uuid4 from fastapi import BackgroundTasks, FastAPI, HTTPException, status from asr import run - +from enum import Enum from typing import Optional from pydantic import BaseModel from base_util import LOG_FORMAT @@ -11,11 +11,18 @@ api = FastAPI() +class Status(Enum): + CREATED = "CREATED" + PROCESSING = "PROCESSING" + DONE = "DONE" + ERROR = "ERROR" + + class Task(BaseModel): input_uri: str output_uri: str + status: Status = Status.CREATED id: str | None = None - status: str | None = None all_tasks = [ @@ -39,7 +46,6 @@ def get_task_index(task_id: str) -> int: return -1 -# delete after processing is done or if client calls for it def delete_task(task_id) -> bool: task_index = get_task_index(task_id) if task_index == -1: @@ -48,13 +54,24 @@ def delete_task(task_id) -> bool: return True +def update_task(task: Task) -> bool: + task_index = get_task_index(task.id) + if task_index == -1: + return False + all_tasks[task_index] = task.dict() + return True + + def try_whisper(task: Task): logger.info(f"Trying to call Whisper for task {task.id}") try: run(task.input_uri, task.output_uri) + task.status = Status.DONE except Exception: logger.exception("Failed to run whisper") - logger.info(f"Successfully ran Whisper for task {task.id}") + task.status = Status.ERROR + update_task(task) + logger.info(f"Done running Whisper for task {task.id}") @api.get("/tasks") @@ -98,6 +115,11 @@ async def remove_task(task_id: str): } +@api.get("/ping") +async def ping(): + return "pong" + + if __name__ == "__main__": import sys import uvicorn From 9f20bf0b593a1d0195697f509a2910c47327808a Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 25 Sep 2024 10:40:19 +0200 Subject: [PATCH 31/54] added port and log arguments to whisper_api.py --- scripts/run-api.sh | 12 +----------- whisper_api.py | 33 +++++++++++++++++++++++++++++---- 2 files changed, 30 insertions(+), 15 deletions(-) diff --git a/scripts/run-api.sh b/scripts/run-api.sh index 3e086c4..248e327 100755 --- a/scripts/run-api.sh +++ b/scripts/run-api.sh @@ -1,15 +1,5 @@ #!/bin/bash -# prints message and exists 1 (i.e. no success) -die () { - echo >&2 "$@" - exit 1 -} - -# Starts the server on the port provided in the first argument (default port = 5303) -PORT="${1:-5333}" -echo $PORT | grep -E -q '^[0-9]+$' || die "Port number must be numeric, $PORT provided" - SCRIPTPATH="$( cd "$(dirname "$0")" ; pwd -P )" # Load the environment vars @@ -23,4 +13,4 @@ fi cd "$SCRIPTPATH/.." -poetry run python whisper_api.py +poetry run python whisper_api.py "$@" diff --git a/whisper_api.py b/whisper_api.py index 4e981b4..3817753 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -5,7 +5,6 @@ from enum import Enum from typing import Optional from pydantic import BaseModel -from base_util import LOG_FORMAT logger = logging.getLogger(__name__) api = FastAPI() @@ -55,6 +54,9 @@ def delete_task(task_id) -> bool: def update_task(task: Task) -> bool: + if not task or not task.id: + logger.warning("Tried to update task without ID") + return False task_index = get_task_index(task.id) if task_index == -1: return False @@ -123,10 +125,33 @@ async def ping(): if __name__ == "__main__": import sys import uvicorn + from argparse import ArgumentParser + from base_util import LOG_FORMAT + + # first read the CLI arguments + parser = ArgumentParser(description="whisper-api") + parser.add_argument("--port", action="store", dest="port", default="5333") + parser.add_argument("--log", action="store", dest="loglevel", default="INFO") + args = parser.parse_args() + # initialises the root logger logging.basicConfig( - stream=sys.stdout, - level="INFO", + stream=sys.stdout, # configure a stream handler only for now (single handler) format=LOG_FORMAT, ) - uvicorn.run(api, port=8081, host="0.0.0.0") + + # setting the loglevel + log_level = args.loglevel.upper() + logger.setLevel(log_level) + logger.info(f"Logger initialized (log level: {log_level})") + logger.info(f"Got the following CMD line arguments: {args}") + + port = 5333 + try: + port = int(args.port) + except ValueError: + logger.error( + f"--port must be a valid integer, starting with default port {port}" + ) + + uvicorn.run(api, port=port, host="0.0.0.0") From bdd5dc7e75011deea9364f6706fa6dbdd7465e9b Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 25 Sep 2024 11:29:34 +0200 Subject: [PATCH 32/54] adapted main.py to either start job or service --- main.py | 41 +++++++++++++++++++++++++++++++++-------- scripts/run-api.sh | 2 +- whisper_api.py | 2 ++ 3 files changed, 36 insertions(+), 9 deletions(-) diff --git a/main.py b/main.py index ca31499..0d2fcc1 100644 --- a/main.py +++ b/main.py @@ -1,10 +1,6 @@ import logging import sys - from base_util import LOG_FORMAT -from config import input_uri, output_uri -import asr - # initialises the root logger logging.basicConfig( @@ -15,18 +11,41 @@ logger = logging.getLogger() +def run_api(port: int): + from whisper_api import api + import uvicorn + + logger.info("Running Whisper as a service") + uvicorn.run(api, port=port, host="0.0.0.0") + + +def run_job(intput_uri: str, output_uri: str): + import asr + + logger.info("Running Whisper as a one time job") + if not input_uri or not output_uri: + logger.error("Please supply the --input and --output params") + return False + + return asr.run(input_uri, output_uri) + + # Start the worker if __name__ == "__main__": - from argparse import ArgumentParser + import sys from base_util import LOG_FORMAT + from config import input_uri, output_uri + from argparse import ArgumentParser # first read the CLI arguments parser = ArgumentParser(description="whisper-asr-worker") + parser.add_argument("--service", action="store", dest="service", default="n") parser.add_argument("--input", action="store", dest="input_uri", default=input_uri) parser.add_argument( "--output", action="store", dest="output_uri", default=output_uri ) parser.add_argument("--log", action="store", dest="loglevel", default="INFO") + parser.add_argument("--port", action="store", dest="port", default="5333") args = parser.parse_args() # initialises the root logger @@ -41,7 +60,13 @@ logger.info(f"Logger initialized (log level: {log_level})") logger.info(f"Got the following CMD line arguments: {args}") - if args.input_uri: - asr.run(args.input_uri, args.output_uri) + run_as_service = args.service == "y" + + if run_as_service: + try: + port = int(args.port) + run_api(port) + except ValueError: + logger.error("--port must be a valid integer, quitting") else: - logger.error("Please supply the --input param (--output is optional)") + run_job(args.input_uri, args.output_uri) diff --git a/scripts/run-api.sh b/scripts/run-api.sh index 248e327..c953098 100755 --- a/scripts/run-api.sh +++ b/scripts/run-api.sh @@ -13,4 +13,4 @@ fi cd "$SCRIPTPATH/.." -poetry run python whisper_api.py "$@" +poetry run python main.py --service=y "$@" diff --git a/whisper_api.py b/whisper_api.py index 3817753..dbae13d 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -67,6 +67,8 @@ def update_task(task: Task) -> bool: def try_whisper(task: Task): logger.info(f"Trying to call Whisper for task {task.id}") try: + task.status = Status.PROCESSING + update_task(task) run(task.input_uri, task.output_uri) task.status = Status.DONE except Exception: From 6690ccdd0060994fc5b669228a0361fe73e3ff7b Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 25 Sep 2024 13:52:16 +0200 Subject: [PATCH 33/54] disable temperature because of runtime bug --- whisper.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/whisper.py b/whisper.py index e0c01b8..41cd5aa 100644 --- a/whisper.py +++ b/whisper.py @@ -1,4 +1,4 @@ -import ast +# import ast import json import logging import os @@ -10,7 +10,7 @@ w_best_of, w_device, w_model, - w_temperature, + # w_temperature, w_vad, w_word_timestamps, ) @@ -40,7 +40,7 @@ def run_asr(input_path, output_dir) -> bool: vad_filter=w_vad, beam_size=w_beam_size, best_of=w_best_of, - temperature=ast.literal_eval(w_temperature), + # temperature=ast.literal_eval(w_temperature), language="nl", word_timestamps=w_word_timestamps, ) From b6f1c4068fc684e6bbcfbcf7df324eabbcab5c30 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Wed, 25 Sep 2024 16:27:18 +0200 Subject: [PATCH 34/54] model download should work + loading model on service startup only --- asr.py | 7 ++++--- main.py | 2 +- pyproject.toml | 2 +- whisper.py | 25 +++++++++++++------------ whisper_api.py | 21 ++++++++++++++++++++- 5 files changed, 39 insertions(+), 18 deletions(-) diff --git a/asr.py b/asr.py index 24c3f9c..2c3defd 100644 --- a/asr.py +++ b/asr.py @@ -2,7 +2,7 @@ import os from base_util import get_asset_info, asr_output_dir -from config import s3_endpoint_url, s3_bucket, s3_folder_in_bucket +from config import s3_endpoint_url, s3_bucket, s3_folder_in_bucket, model_base_dir from download import download_uri from whisper import run_asr, WHISPER_JSON_FILE from s3_util import S3Store @@ -10,9 +10,10 @@ from daan_transcript import generate_daan_transcript, DAAN_JSON_FILE logger = logging.getLogger(__name__) +os.environ['HF_HOME'] = model_base_dir # change dir where model is downloaded -def run(input_uri: str, output_uri: str) -> bool: +def run(input_uri: str, output_uri: str, model=None) -> bool: logger.info(f"Processing {input_uri} (save to --> {output_uri})") # 1. download input result = download_uri(input_uri) @@ -36,7 +37,7 @@ def run(input_uri: str, output_uri: str) -> bool: # 3. run ASR if not asr_already_done(output_path): logger.info("No Whisper transcript found") - run_asr(input_path, output_path) + run_asr(input_path, output_path, model) else: logger.info(f"Whisper transcript already present in {output_path}") diff --git a/main.py b/main.py index 0d2fcc1..90a5e85 100644 --- a/main.py +++ b/main.py @@ -19,7 +19,7 @@ def run_api(port: int): uvicorn.run(api, port=port, host="0.0.0.0") -def run_job(intput_uri: str, output_uri: str): +def run_job(input_uri: str, output_uri: str): import asr logger.info("Running Whisper as a one time job") diff --git a/pyproject.toml b/pyproject.toml index 7294fa3..bb9f202 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "whisper-asr-worker" -version = "0.2.0" +version = "0.3.0" description = "Whisper speech-to-text worker" authors = ["Dragos Alexandru Balan "] license = "MIT" diff --git a/whisper.py b/whisper.py index 41cd5aa..68e5e90 100644 --- a/whisper.py +++ b/whisper.py @@ -22,19 +22,20 @@ logger = logging.getLogger(__name__) -def run_asr(input_path, output_dir) -> bool: +def run_asr(input_path, output_dir, model=None) -> bool: logger.info(f"Starting ASR on {input_path}") - logger.info(f"Device used: {w_device}") - # checking if model needs to be downloaded from HF or not - model_location = model_base_dir if check_model_availability() else w_model - model = faster_whisper.WhisperModel( - model_location, - device=w_device, - compute_type=( # float16 only works on GPU, float32 or int8 are recommended for CPU - "float16" if w_device == "cuda" else "float32" - ), - ) - logger.info("Model loaded, now getting segments") + if not model: + logger.info(f"Device used: {w_device}") + # checking if model needs to be downloaded from HF or not + model_location = model_base_dir if check_model_availability() else w_model + model = faster_whisper.WhisperModel( + model_location, + device=w_device, + compute_type=( # float16 only works on GPU, float32 or int8 are recommended for CPU + "float16" if w_device == "cuda" else "float32" + ), + ) + logger.info("Model loaded, now getting segments") segments, _ = model.transcribe( input_path, vad_filter=w_vad, diff --git a/whisper_api.py b/whisper_api.py index dbae13d..21ee862 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -5,10 +5,29 @@ from enum import Enum from typing import Optional from pydantic import BaseModel +from config import ( + model_base_dir, + w_device, + w_model, +) +import faster_whisper +from model_download import check_model_availability logger = logging.getLogger(__name__) api = FastAPI() +logger.info(f"Loading model on device {w_device}") +# checking if model needs to be downloaded from HF or not +model_location = model_base_dir if check_model_availability() else w_model +model = faster_whisper.WhisperModel( + model_location, + device=w_device, + compute_type=( # float16 only works on GPU, float32 or int8 are recommended for CPU + "float16" if w_device == "cuda" else "float32" + ), +) +logger.info("Model loaded!") + class Status(Enum): CREATED = "CREATED" @@ -69,7 +88,7 @@ def try_whisper(task: Task): try: task.status = Status.PROCESSING update_task(task) - run(task.input_uri, task.output_uri) + run(task.input_uri, task.output_uri, model) task.status = Status.DONE except Exception: logger.exception("Failed to run whisper") From 65844484e21a66dde3ed0dd45d2bc39baa1f71a0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Wed, 25 Sep 2024 16:33:59 +0200 Subject: [PATCH 35/54] Fix pipeline issues TODO: implement Willem's audio-extraction suggestions here too --- asr.py | 2 +- poetry.lock | 16 ++++++++-------- 2 files changed, 9 insertions(+), 9 deletions(-) diff --git a/asr.py b/asr.py index 2c3defd..521afe5 100644 --- a/asr.py +++ b/asr.py @@ -10,7 +10,7 @@ from daan_transcript import generate_daan_transcript, DAAN_JSON_FILE logger = logging.getLogger(__name__) -os.environ['HF_HOME'] = model_base_dir # change dir where model is downloaded +os.environ["HF_HOME"] = model_base_dir # change dir where model is downloaded def run(input_uri: str, output_uri: str, model=None) -> bool: diff --git a/poetry.lock b/poetry.lock index 58232e9..73762e0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. [[package]] name = "annotated-types" @@ -146,17 +146,17 @@ files = [ [[package]] name = "boto3" -version = "1.35.24" +version = "1.35.26" description = "The AWS SDK for Python" optional = false python-versions = ">=3.8" files = [ - {file = "boto3-1.35.24-py3-none-any.whl", hash = "sha256:97fcc1a14cbc759e4ba9535ced703a99fcf652c9c4b8dfcd06f292c80551684b"}, - {file = "boto3-1.35.24.tar.gz", hash = "sha256:be7807f30f26d6c0057e45cfd09dad5968e664488bf4f9138d0bb7a0f6d8ed40"}, + {file = "boto3-1.35.26-py3-none-any.whl", hash = "sha256:c31db992655db233d98762612690cfe60723c9e1503b5709aad92c1c564877bb"}, + {file = "boto3-1.35.26.tar.gz", hash = "sha256:b04087afd3570ba540fd293823c77270ec675672af23da9396bd5988a3f8128b"}, ] [package.dependencies] -botocore = ">=1.35.24,<1.36.0" +botocore = ">=1.35.26,<1.36.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.10.0,<0.11.0" @@ -165,13 +165,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.35.24" +version = "1.35.26" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">=3.8" files = [ - {file = "botocore-1.35.24-py3-none-any.whl", hash = "sha256:eb9ccc068255cc3d24c36693fda6aec7786db05ae6c2b13bcba66dce6a13e2e3"}, - {file = "botocore-1.35.24.tar.gz", hash = "sha256:1e59b0f14f4890c4f70bd6a58a634b9464bed1c4c6171f87c8795d974ade614b"}, + {file = "botocore-1.35.26-py3-none-any.whl", hash = "sha256:0b9dee5e4a3314e251e103585837506b17fcc7485c3c8adb61a9a913f46da1e7"}, + {file = "botocore-1.35.26.tar.gz", hash = "sha256:19efc3a22c9df77960712b4e203f912486f8bcd3794bff0fd7b2a0f5f1d5712d"}, ] [package.dependencies] From 66e10f07150c915721dc34ba61dfa9b79c7802a6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Wed, 25 Sep 2024 16:42:26 +0200 Subject: [PATCH 36/54] Implement some changes from the audio extraction PR --- base_util.py | 3 +-- download.py | 2 +- s3_util.py | 17 +++++++++-------- transcode.py | 2 +- 4 files changed, 12 insertions(+), 12 deletions(-) diff --git a/base_util.py b/base_util.py index 4ffd5fe..d0384b8 100644 --- a/base_util.py +++ b/base_util.py @@ -1,5 +1,4 @@ import logging -import ntpath import os import subprocess from typing import Tuple @@ -12,7 +11,7 @@ # the file name without extension is used as asset ID def get_asset_info(input_file: str) -> Tuple[str, str]: - file_name = ntpath.basename(input_file) + file_name = os.path.basename(input_file) asset_id, extension = os.path.splitext(file_name) logger.info(f"working with this asset ID {asset_id}") return asset_id, extension diff --git a/download.py b/download.py index 473ae07..679fb51 100644 --- a/download.py +++ b/download.py @@ -30,7 +30,7 @@ def download_uri(uri: str) -> Optional[DownloadResult]: return http_download(uri) -def http_download(url: str) -> Optional[DownloadResult]: +def http_download(url: str) -> DownloadResult: logger.info(f"Checking if {url} was already downloaded") fn = os.path.basename(urlparse(url).path) input_file = os.path.join(input_file_dir, fn) diff --git a/s3_util.py b/s3_util.py index 842aee7..303d36e 100644 --- a/s3_util.py +++ b/s3_util.py @@ -1,10 +1,10 @@ import boto3 import logging -import ntpath import os from pathlib import Path import tarfile from typing import List, Tuple, Optional +from urllib.parse import urlparse logger = logging.getLogger(__name__) @@ -16,12 +16,12 @@ def generate_asset_id_from_input_file( input_file: str, with_extension: bool = False ) -> str: logger.info(f"generating asset ID for {input_file}") - file_name = ntpath.basename(input_file) # grab the file_name from the path + file_name = os.path.basename(input_file) # grab the file_name from the path if with_extension: return file_name # otherwise cut off the extension - asset_id, extension = os.path.splitext(file_name) + asset_id, _ = os.path.splitext(file_name) return asset_id @@ -60,10 +60,11 @@ def tar_list_of_files(archive_path: str, file_list: List[str]) -> bool: def validate_s3_uri(s3_uri: str) -> bool: - if s3_uri[0:5] != "s3://": + o = urlparse(s3_uri, allow_fragments=False) + if o.scheme != "s3": logger.error(f"Invalid protocol in {s3_uri}") return False - if len(s3_uri[5:].split("/")) < 2: + if o.path == "": logger.error(f"No object_name specified {s3_uri}") return False return True @@ -72,9 +73,9 @@ def validate_s3_uri(s3_uri: str) -> bool: # e.g. "s3://beng-daan-visxp/jaap-dane-test/dane-test.tar.gz" def parse_s3_uri(s3_uri: str) -> Tuple[str, str]: logger.info(f"Parsing s3 URI {s3_uri}") - tmp = s3_uri[5:] - bucket = tmp[: tmp.find("/")] # beng-daan-visxp - object_name = s3_uri[len(bucket) + 6 :] # jaap-dane-test/dane-test.tar.gz + o = urlparse(s3_uri, allow_fragments=False) + bucket = o.netloc # beng-daan-visxp + object_name = o.path.lstrip("/") # jaap-dane-test/dane-test.tar.gz return bucket, object_name diff --git a/transcode.py b/transcode.py index 2a1231d..63e019c 100644 --- a/transcode.py +++ b/transcode.py @@ -3,7 +3,7 @@ from typing import Optional import base_util -from base_util import data_base_dir +from config import data_base_dir logger = logging.getLogger(__name__) From d894219f2441c814ab98dfc8663efe3e31aaeecb Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Wed, 25 Sep 2024 16:46:05 +0200 Subject: [PATCH 37/54] Hopefully pipeline passes so I can test this --- download.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/download.py b/download.py index 679fb51..473ae07 100644 --- a/download.py +++ b/download.py @@ -30,7 +30,7 @@ def download_uri(uri: str) -> Optional[DownloadResult]: return http_download(uri) -def http_download(url: str) -> DownloadResult: +def http_download(url: str) -> Optional[DownloadResult]: logger.info(f"Checking if {url} was already downloaded") fn = os.path.basename(urlparse(url).path) input_file = os.path.join(input_file_dir, fn) From ecb2eb5290a2b6bedfc486156c285c4e08684757 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 26 Sep 2024 14:21:58 +0200 Subject: [PATCH 38/54] If file already exists, report back less than zero download_time --- download.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/download.py b/download.py index 473ae07..8116ea8 100644 --- a/download.py +++ b/download.py @@ -89,7 +89,9 @@ def s3_download(s3_uri: str) -> Optional[DownloadResult]: if not success: logger.error("Failed to download input data from S3") return None - download_time = (time.time() - start_time) * 1000 # time in ms + download_time = int((time.time() - start_time) * 1000) # time in ms + else: + download_time = -1 # Report back? return DownloadResult( input_file, mime_type, download_time # TODO add content_length ) From 5def84b22c95d136134cb45265f1246f5be1fcc5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Thu, 26 Sep 2024 14:30:02 +0200 Subject: [PATCH 39/54] Add provenance phew --- asr.py | 95 +++++++++++++++++++++++++++++++++++++++++----- base_util.py | 18 +++++++++ daan_transcript.py | 22 +++++++++-- download.py | 29 ++++++++++++-- transcode.py | 44 ++++++++++++++++++--- whisper.py | 23 ++++++++++- 6 files changed, 207 insertions(+), 24 deletions(-) diff --git a/asr.py b/asr.py index 521afe5..a2b76bd 100644 --- a/asr.py +++ b/asr.py @@ -1,8 +1,22 @@ import logging import os +import time +import pkg_resources + +from base_util import get_asset_info, asr_output_dir, save_provenance +from config import ( + s3_endpoint_url, + s3_bucket, + s3_folder_in_bucket, + model_base_dir, + w_word_timestamps, + w_device, + w_model, + w_beam_size, + w_best_of, + w_vad, +) -from base_util import get_asset_info, asr_output_dir -from config import s3_endpoint_url, s3_bucket, s3_folder_in_bucket, model_base_dir from download import download_uri from whisper import run_asr, WHISPER_JSON_FILE from s3_util import S3Store @@ -11,10 +25,15 @@ logger = logging.getLogger(__name__) os.environ["HF_HOME"] = model_base_dir # change dir where model is downloaded +my_version = pkg_resources.get_distribution( + "whisper-asr-worker" +).version # get worker version def run(input_uri: str, output_uri: str, model=None) -> bool: logger.info(f"Processing {input_uri} (save to --> {output_uri})") + start_time = time.time() + prov_steps = [] # track provenance # 1. download input result = download_uri(input_uri) logger.info(result) @@ -22,39 +41,95 @@ def run(input_uri: str, output_uri: str, model=None) -> bool: logger.error("Could not obtain input, quitting...") return False + prov_steps.append(result.provenance) + input_path = result.file_path asset_id, extension = get_asset_info(input_path) output_path = asr_output_dir(input_path) # 2. check if the input file is suitable for processing any further - transcoded_file_path = try_transcode(input_path, asset_id, extension) - if not transcoded_file_path: + transcode_output = try_transcode(input_path, asset_id, extension) + if not transcode_output: logger.error("The transcode failed to yield a valid file to continue with") return False else: - input_path = transcoded_file_path + input_path = transcode_output.transcoded_file_path + prov_steps.append(transcode_output.provenance) # 3. run ASR if not asr_already_done(output_path): logger.info("No Whisper transcript found") - run_asr(input_path, output_path, model) + whisper_prov = run_asr(input_path, output_path, model) + if whisper_prov: + prov_steps.append(whisper_prov) else: logger.info(f"Whisper transcript already present in {output_path}") + provenance = { + "activity_name": "Whisper transcript already exists", + "activity_description": "", + "processing_time_ms": "", + "start_time_unix": "", + "parameters": [], + "software_version": "", + "input_data": "", + "output_data": "", + "steps": [], + } + prov_steps.append(provenance) # 4. generate JSON transcript if not daan_transcript_already_done(output_path): logger.info("No DAAN transcript found") - success = generate_daan_transcript(output_path) - if not success: + daan_prov = generate_daan_transcript(output_path) + if daan_prov: + prov_steps.append(daan_prov) + else: logger.warning("Could not generate DAAN transcript") else: logger.info(f"DAAN transcript already present in {output_path}") + provenance = { + "activity_name": "DAAN transcript already exists", + "activity_description": "", + "processing_time_ms": "", + "start_time_unix": "", + "parameters": [], + "software_version": "", + "input_data": "", + "output_data": "", + "steps": [], + } + prov_steps.append(provenance) + + end_time = (time.time() - start_time) * 1000 + final_prov = { + "activity_name": "Whisper ASR Worker", + "activity_description": "Worker that gets a video/audio file as input and outputs JSON transcripts in various formats", + "processing_time_ms": end_time, + "start_time_unix": start_time, + "parameters": { + "word_timestamps": w_word_timestamps, + "device": w_device, + "vad": w_vad, + "model": w_model, + "beam_size": w_beam_size, + "best_of": w_best_of, + }, + "software_version": my_version, + "input_data": input_uri, + "output_data": output_uri if output_uri else output_path, + "steps": prov_steps, + } + + prov_success = save_provenance(final_prov, output_path) + if not prov_success: + logger.warning("Could not save the provenance") # 5. transfer output if output_uri: transfer_asr_output(output_path, asset_id) else: logger.info("No output_uri specified, so all is done") + return True @@ -90,14 +165,14 @@ def transfer_asr_output(output_path: str, asset_id: str) -> bool: # check if there is a whisper-transcript.json -def asr_already_done(output_dir): +def asr_already_done(output_dir) -> bool: whisper_transcript = os.path.join(output_dir, WHISPER_JSON_FILE) logger.info(f"Checking existence of {whisper_transcript}") return os.path.exists(os.path.join(output_dir, WHISPER_JSON_FILE)) # check if there is a daan-es-transcript.json -def daan_transcript_already_done(output_dir): +def daan_transcript_already_done(output_dir) -> bool: daan_transcript = os.path.join(output_dir, DAAN_JSON_FILE) logger.info(f"Checking existence of {daan_transcript}") return os.path.exists(os.path.join(output_dir, DAAN_JSON_FILE)) diff --git a/base_util.py b/base_util.py index d0384b8..d0ea6fe 100644 --- a/base_util.py +++ b/base_util.py @@ -1,11 +1,13 @@ import logging import os import subprocess +import json from typing import Tuple from config import data_base_dir LOG_FORMAT = "%(asctime)s|%(levelname)s|%(process)d|%(module)s|%(funcName)s|%(lineno)d|%(message)s" +PROVENANCE_JSON_FILE = "provenance.json" logger = logging.getLogger(__name__) @@ -55,3 +57,19 @@ def run_shell_command(cmd: str) -> bool: except Exception: logger.exception("Exception") return False + + +def save_provenance(provenance: dict, asr_output_dir: str) -> bool: + logger.info(f"Saving provenance to: {asr_output_dir}") + try: + # write provenance.json + with open( + os.path.join(asr_output_dir, PROVENANCE_JSON_FILE), "w+", encoding="utf-8" + ) as f: + logger.info(provenance) + json.dump(provenance, f, ensure_ascii=False, indent=4) + except EnvironmentError as e: # OSError or IOError... + logger.exception(os.strerror(e.errno)) + return False + + return True diff --git a/daan_transcript.py b/daan_transcript.py index 6c75526..ee77732 100644 --- a/daan_transcript.py +++ b/daan_transcript.py @@ -1,6 +1,7 @@ import json import logging import os +import time from typing import TypedDict, List, Optional from whisper import WHISPER_JSON_FILE @@ -19,12 +20,13 @@ class ParsedResult(TypedDict): # asr_output_dir e.g /data/output/whisper-test/ -def generate_daan_transcript(asr_output_dir: str) -> bool: +def generate_daan_transcript(asr_output_dir: str) -> Optional[dict]: logger.info(f"Generating transcript from: {asr_output_dir}") + start_time = time.time() whisper_transcript = load_whisper_transcript(asr_output_dir) if not whisper_transcript: logger.error("No whisper_transcript.json found") - return False + return None transcript = parse_whisper_transcript(whisper_transcript) @@ -37,9 +39,21 @@ def generate_daan_transcript(asr_output_dir: str) -> bool: json.dump(transcript, f, ensure_ascii=False, indent=4) except EnvironmentError as e: # OSError or IOError... logger.exception(os.strerror(e.errno)) - return False + return None - return True + end_time = (time.time() - start_time) * 1000 + provenance = { + "activity_name": "Whisper transcript -> DAAN transcript", + "activity_description": "Converts the output of Whisper to the DAAN index format", + "processing_time_ms": end_time, + "start_time_unix": start_time, + "parameters": [], + "software_version": "", + "input_data": whisper_transcript, + "output_data": transcript, + "steps": [], + } + return provenance def load_whisper_transcript(asr_output_dir: str) -> Optional[dict]: diff --git a/download.py b/download.py index 473ae07..7c2c35b 100644 --- a/download.py +++ b/download.py @@ -17,7 +17,8 @@ @dataclass class DownloadResult: file_path: str # target_file_path, # TODO harmonize with dane-download-worker - mime_type: str # download_data.get("mime_type", "unknown"), + mime_type: str + provenance: dict download_time: float = -1 # time (ms) taken to receive data after request content_length: int = -1 # download_data.get("content_length", -1), @@ -53,8 +54,19 @@ def http_download(url: str) -> Optional[DownloadResult]: file.write(response.content) file.close() download_time = (time.time() - start_time) * 1000 # time in ms + provenance = { + "activity_name": "Input download", + "activity_description": "Downloads the input file from INPUT_URI", + "processing_time_ms": download_time, + "start_time_unix": start_time, + "parameters": [], + "software_version": "", + "input_data": url, + "output_data": input_file, + "steps": [], + } return DownloadResult( - input_file, mime_type, download_time # TODO add content_length + input_file, mime_type, provenance, download_time # TODO add content_length ) @@ -90,6 +102,17 @@ def s3_download(s3_uri: str) -> Optional[DownloadResult]: logger.error("Failed to download input data from S3") return None download_time = (time.time() - start_time) * 1000 # time in ms + provenance = { + "activity_name": "Input download", + "activity_description": "Downloads the input file from INPUT_URI", + "processing_time_ms": download_time, + "start_time_unix": start_time, + "parameters": [], + "software_version": "", + "input_data": s3_uri, + "output_data": input_file, + "steps": [], + } return DownloadResult( - input_file, mime_type, download_time # TODO add content_length + input_file, mime_type, provenance, download_time # TODO add content_length ) diff --git a/transcode.py b/transcode.py index 63e019c..b68a252 100644 --- a/transcode.py +++ b/transcode.py @@ -1,6 +1,8 @@ +from dataclasses import dataclass import logging import os from typing import Optional +import time import base_util from config import data_base_dir @@ -8,15 +10,38 @@ logger = logging.getLogger(__name__) -def try_transcode(input_path, asset_id, extension) -> Optional[str]: +@dataclass +class TranscodeOutput: + transcoded_file_path: str + provenance: dict + + +def try_transcode(input_path, asset_id, extension) -> Optional[TranscodeOutput]: logger.info( f"Determining if transcode is required for input_path: {input_path} asset_id: ({asset_id}) extension: ({extension})" ) + start_time = time.time() + + provenance = { + "activity_name": "Transcoding", + "activity_description": "Checks if input needs transcoding, then transcodes if so", + "processing_time_ms": 0, + "start_time_unix": start_time, + "parameters": [], + "software_version": "", + "input_data": input_path, + "output_data": "", + "steps": [], + } # if it's alrady valid audio no transcode necessary if _is_audio_file(extension): logger.info("No transcode required, input is audio") - return input_path + end_time = (time.time() - start_time) * 1000 + provenance["processing_time_ms"] = end_time + provenance["output_data"] = input_path + provenance["steps"].append("No transcode required, input is audio") + return TranscodeOutput(input_path, provenance) # if the input format is not supported, fail if not _is_transcodable(extension): @@ -27,7 +52,13 @@ def try_transcode(input_path, asset_id, extension) -> Optional[str]: transcoded_file_path = os.path.join(data_base_dir, "input", f"{asset_id}.mp3") if os.path.exists(transcoded_file_path): logger.info("Transcoded file is already available, no new transcode needed") - return transcoded_file_path + end_time = (time.time() - start_time) * 1000 + provenance["processing_time_ms"] = end_time + provenance["output_data"] = transcoded_file_path + provenance["steps"].append( + "Transcoded file is already available, no new transcode needed" + ) + return TranscodeOutput(transcoded_file_path, provenance) # go ahead and transcode the input file success = transcode_to_mp3( @@ -41,8 +72,11 @@ def try_transcode(input_path, asset_id, extension) -> Optional[str]: logger.info( f"Transcode of {extension} successful, returning: {transcoded_file_path}" ) - - return transcoded_file_path + end_time = (time.time() - start_time) * 1000 + provenance["processing_time_ms"] = end_time + provenance["output_data"] = transcoded_file_path + provenance["steps"].append("Transcode successful") + return TranscodeOutput(transcoded_file_path, provenance) def transcode_to_mp3(path: str, asr_path: str) -> bool: diff --git a/whisper.py b/whisper.py index 68e5e90..e2d7d88 100644 --- a/whisper.py +++ b/whisper.py @@ -2,6 +2,8 @@ import json import logging import os +import time +from typing import Optional import faster_whisper from config import ( @@ -22,8 +24,9 @@ logger = logging.getLogger(__name__) -def run_asr(input_path, output_dir, model=None) -> bool: +def run_asr(input_path, output_dir, model=None) -> Optional[dict]: logger.info(f"Starting ASR on {input_path}") + start_time = time.time() if not model: logger.info(f"Device used: {w_device}") # checking if model needs to be downloaded from HF or not @@ -77,8 +80,24 @@ def run_asr(input_path, output_dir, model=None) -> bool: asset_id, _ = get_asset_info(input_path) # Also added "carrierId" because the DAAN format requires it transcript = {"carrierId": asset_id, "segments": segments_to_add} + end_time = time.time() - start_time - return write_whisper_json(transcript, output_dir) + provenance = { + "activity_name": "Running Whisper", + "activity_description": "Runs Whisper to transcribe the input audio file", + "processing_time_ms": end_time, + "start_time_unix": start_time, + "parameters": [], + "software_version": faster_whisper.__version__, + "input_data": input_path, + "output_data": transcript, + "steps": [], + } + + if write_whisper_json(transcript, output_dir): + return provenance + else: + return None def write_whisper_json(transcript: dict, output_dir: str) -> bool: From 5b832ea0fe20bf044e05ebc6bcbd4dff1b384ebc Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99=20B=C4=83lan?= <33976463+greenw0lf@users.noreply.github.com> Date: Thu, 26 Sep 2024 14:50:59 +0200 Subject: [PATCH 40/54] Update download.py remove whitespace on empty line --- download.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/download.py b/download.py index 33c682c..5a55b90 100644 --- a/download.py +++ b/download.py @@ -105,7 +105,7 @@ def s3_download(s3_uri: str) -> Optional[DownloadResult]: download_time = int((time.time() - start_time) * 1000) # time in ms else: download_time = -1 # Report back? - + provenance = { "activity_name": "Input download", "activity_description": "Downloads the input file from INPUT_URI", From aac0bc868eddfd35dea51d9e32901240c8371053 Mon Sep 17 00:00:00 2001 From: Sara Veldhoen Date: Thu, 26 Sep 2024 15:08:19 +0200 Subject: [PATCH 41/54] Use Task object to represent tasks, and use dict to keep all_tasks. WIP! --- whisper_api.py | 26 +++++++++++++++++--------- 1 file changed, 17 insertions(+), 9 deletions(-) diff --git a/whisper_api.py b/whisper_api.py index 21ee862..bef3d04 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -1,4 +1,5 @@ import logging +from typing import Optional from uuid import uuid4 from fastapi import BackgroundTasks, FastAPI, HTTPException, status from asr import run @@ -42,14 +43,21 @@ class Task(BaseModel): status: Status = Status.CREATED id: str | None = None + def __init__(self, input_uri, output_uri, status): + self.input_uri = input_uri + self. output_uri = output_uri + self.status = status -all_tasks = [ - { - "input_uri": "http://modelhosting.beng.nl/whisper-asr.mp3", - "output_uri": "http://modelhosting.beng.nl/assets/whisper-asr", - "id": "test1", - } -] + +all_tasks: dict[str, Task] = { + 'dummy_id': Task( + input_uri="http://modelhosting.beng.nl/whisper-asr.mp3", + output_uri="http://modelhosting.beng.nl/assets/whisper-asr", + status=Status.DONE + ) +} + +current_task: Optional[Task] = None def get_task_by_id(task_id: str) -> Optional[dict]: @@ -71,7 +79,6 @@ def delete_task(task_id) -> bool: del all_tasks[task_index] return True - def update_task(task: Task) -> bool: if not task or not task.id: logger.warning("Tried to update task without ID") @@ -85,6 +92,7 @@ def update_task(task: Task) -> bool: def try_whisper(task: Task): logger.info(f"Trying to call Whisper for task {task.id}") + try: task.status = Status.PROCESSING update_task(task) @@ -107,7 +115,7 @@ async def create_task(task: Task, background_tasks: BackgroundTasks): background_tasks.add_task(try_whisper, task) task.id = str(uuid4()) task_dict = task.dict() - all_tasks.append(task_dict) + all_tasks[task.id] = task return {"data": task_dict, "msg": "Successfully added task", "task_id": task.id} From ebda32bbe61bcc0ccc89dcab0e62f7a8e19c9218 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Thu, 26 Sep 2024 15:49:03 +0200 Subject: [PATCH 42/54] Revert some stuff + add response code when busy --- whisper_api.py | 33 ++++++++++++++++++++------------- 1 file changed, 20 insertions(+), 13 deletions(-) diff --git a/whisper_api.py b/whisper_api.py index bef3d04..a87a635 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -1,10 +1,9 @@ import logging from typing import Optional from uuid import uuid4 -from fastapi import BackgroundTasks, FastAPI, HTTPException, status +from fastapi import BackgroundTasks, FastAPI, HTTPException, status, Response from asr import run from enum import Enum -from typing import Optional from pydantic import BaseModel from config import ( model_base_dir, @@ -45,17 +44,17 @@ class Task(BaseModel): def __init__(self, input_uri, output_uri, status): self.input_uri = input_uri - self. output_uri = output_uri + self.output_uri = output_uri self.status = status -all_tasks: dict[str, Task] = { - 'dummy_id': Task( - input_uri="http://modelhosting.beng.nl/whisper-asr.mp3", - output_uri="http://modelhosting.beng.nl/assets/whisper-asr", - status=Status.DONE - ) -} +all_tasks = [ + { + "input_uri": "http://modelhosting.beng.nl/whisper-asr.mp3", + "output_uri": "http://modelhosting.beng.nl/assets/whisper-asr", + "id": "test1", + } +] current_task: Optional[Task] = None @@ -79,6 +78,7 @@ def delete_task(task_id) -> bool: del all_tasks[task_index] return True + def update_task(task: Task) -> bool: if not task or not task.id: logger.warning("Tried to update task without ID") @@ -92,7 +92,7 @@ def update_task(task: Task) -> bool: def try_whisper(task: Task): logger.info(f"Trying to call Whisper for task {task.id}") - + try: task.status = Status.PROCESSING update_task(task) @@ -111,11 +111,18 @@ def get_all_tasks(): @api.post("/tasks", status_code=status.HTTP_201_CREATED) -async def create_task(task: Task, background_tasks: BackgroundTasks): +async def create_task( + task: Task, background_tasks: BackgroundTasks, response: Response +): + global current_task + if current_task and current_task.status == "PROCESSING": + response.status_code = status.HTTP_503_SERVICE_UNAVAILABLE + return {"msg": "The worker is currently processing a task. Try again later!"} background_tasks.add_task(try_whisper, task) task.id = str(uuid4()) + current_task = task task_dict = task.dict() - all_tasks[task.id] = task + all_tasks.append(task_dict) return {"data": task_dict, "msg": "Successfully added task", "task_id": task.id} From 52625c13f3b8719fef4bba114c1494c1cfc591c6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Thu, 26 Sep 2024 16:06:53 +0200 Subject: [PATCH 43/54] Make status not be mandatory will need to refactor this, very hacky atm --- whisper_api.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/whisper_api.py b/whisper_api.py index a87a635..7b5a405 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -39,7 +39,7 @@ class Status(Enum): class Task(BaseModel): input_uri: str output_uri: str - status: Status = Status.CREATED + status: Status | None = Status.CREATED id: str | None = None def __init__(self, input_uri, output_uri, status): @@ -120,6 +120,7 @@ async def create_task( return {"msg": "The worker is currently processing a task. Try again later!"} background_tasks.add_task(try_whisper, task) task.id = str(uuid4()) + task.status = Status.CREATED current_task = task task_dict = task.dict() all_tasks.append(task_dict) From d64a6a0095dc18410077132507c3434592dee693 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Thu, 26 Sep 2024 16:20:51 +0200 Subject: [PATCH 44/54] no status in __init__ --- whisper_api.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/whisper_api.py b/whisper_api.py index 7b5a405..7f81f79 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -39,13 +39,12 @@ class Status(Enum): class Task(BaseModel): input_uri: str output_uri: str - status: Status | None = Status.CREATED + status: Status = Status.CREATED id: str | None = None - def __init__(self, input_uri, output_uri, status): + def __init__(self, input_uri, output_uri): self.input_uri = input_uri self.output_uri = output_uri - self.status = status all_tasks = [ From 863d210c4d7981492082aeb79327272cfa66aefe Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Thu, 26 Sep 2024 22:56:50 +0200 Subject: [PATCH 45/54] remove __init__ for Task class --- whisper_api.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/whisper_api.py b/whisper_api.py index 7f81f79..db3ec87 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -42,10 +42,6 @@ class Task(BaseModel): status: Status = Status.CREATED id: str | None = None - def __init__(self, input_uri, output_uri): - self.input_uri = input_uri - self.output_uri = output_uri - all_tasks = [ { From 5d141db3e89d46b8804aef44b4d3731ff85aa937 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Thu, 26 Sep 2024 23:19:32 +0200 Subject: [PATCH 46/54] logging current task --- whisper_api.py | 1 + 1 file changed, 1 insertion(+) diff --git a/whisper_api.py b/whisper_api.py index db3ec87..e1a21cd 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -110,6 +110,7 @@ async def create_task( task: Task, background_tasks: BackgroundTasks, response: Response ): global current_task + print(current_task) if current_task and current_task.status == "PROCESSING": response.status_code = status.HTTP_503_SERVICE_UNAVAILABLE return {"msg": "The worker is currently processing a task. Try again later!"} From cefbf9d159b43d84be502e45bbc537711452e124 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Thu, 26 Sep 2024 23:37:22 +0200 Subject: [PATCH 47/54] status should be checked properly now --- whisper_api.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/whisper_api.py b/whisper_api.py index e1a21cd..c8bd713 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -111,7 +111,7 @@ async def create_task( ): global current_task print(current_task) - if current_task and current_task.status == "PROCESSING": + if current_task and current_task.status == Status.PROCESSING: response.status_code = status.HTTP_503_SERVICE_UNAVAILABLE return {"msg": "The worker is currently processing a task. Try again later!"} background_tasks.add_task(try_whisper, task) From cdce764d7afd31fa01a53dcae329bc16414a8728 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Mon, 30 Sep 2024 11:03:13 +0200 Subject: [PATCH 48/54] Change how version is obtained Previous attempt did not work --- asr.py | 16 +++++++++++----- poetry.lock | 33 ++++++++++++++++++++++----------- pyproject.toml | 1 + transcode.py | 2 +- 4 files changed, 35 insertions(+), 17 deletions(-) diff --git a/asr.py b/asr.py index a2b76bd..4b31d22 100644 --- a/asr.py +++ b/asr.py @@ -1,7 +1,7 @@ import logging import os import time -import pkg_resources +import tomli from base_util import get_asset_info, asr_output_dir, save_provenance from config import ( @@ -25,9 +25,15 @@ logger = logging.getLogger(__name__) os.environ["HF_HOME"] = model_base_dir # change dir where model is downloaded -my_version = pkg_resources.get_distribution( - "whisper-asr-worker" -).version # get worker version + + +def _get_project_meta(): + with open('pyproject.toml', mode='rb') as pyproject: + return tomli.load(pyproject)['tool']['poetry'] + + +pkg_meta = _get_project_meta() +version = str(pkg_meta['version']) def run(input_uri: str, output_uri: str, model=None) -> bool: @@ -114,7 +120,7 @@ def run(input_uri: str, output_uri: str, model=None) -> bool: "beam_size": w_beam_size, "best_of": w_best_of, }, - "software_version": my_version, + "software_version": version, "input_data": input_uri, "output_data": output_uri if output_uri else output_path, "steps": prov_steps, diff --git a/poetry.lock b/poetry.lock index 73762e0..acc39e5 100644 --- a/poetry.lock +++ b/poetry.lock @@ -146,17 +146,17 @@ files = [ [[package]] name = "boto3" -version = "1.35.26" +version = "1.35.29" description = "The AWS SDK for Python" optional = false python-versions = ">=3.8" files = [ - {file = "boto3-1.35.26-py3-none-any.whl", hash = "sha256:c31db992655db233d98762612690cfe60723c9e1503b5709aad92c1c564877bb"}, - {file = "boto3-1.35.26.tar.gz", hash = "sha256:b04087afd3570ba540fd293823c77270ec675672af23da9396bd5988a3f8128b"}, + {file = "boto3-1.35.29-py3-none-any.whl", hash = "sha256:2244044cdfa8ac345d7400536dc15a4824835e7ec5c55bc267e118af66bb27db"}, + {file = "boto3-1.35.29.tar.gz", hash = "sha256:7bbb1ee649e09e956952285782cfdebd7e81fc78384f48dfab3d66c6eaf3f63f"}, ] [package.dependencies] -botocore = ">=1.35.26,<1.36.0" +botocore = ">=1.35.29,<1.36.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.10.0,<0.11.0" @@ -165,13 +165,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.35.26" +version = "1.35.29" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">=3.8" files = [ - {file = "botocore-1.35.26-py3-none-any.whl", hash = "sha256:0b9dee5e4a3314e251e103585837506b17fcc7485c3c8adb61a9a913f46da1e7"}, - {file = "botocore-1.35.26.tar.gz", hash = "sha256:19efc3a22c9df77960712b4e203f912486f8bcd3794bff0fd7b2a0f5f1d5712d"}, + {file = "botocore-1.35.29-py3-none-any.whl", hash = "sha256:f8e3ae0d84214eff3fb69cb4dc51cea6c43d3bde82027a94d00c52b941d6c3d5"}, + {file = "botocore-1.35.29.tar.gz", hash = "sha256:4ed28ab03675bb008a290c452c5ddd7aaa5d4e3fa1912aadbdf93057ee84362b"}, ] [package.dependencies] @@ -931,13 +931,13 @@ files = [ [[package]] name = "moto" -version = "5.0.15" +version = "5.0.16" description = "" optional = false python-versions = ">=3.8" files = [ - {file = "moto-5.0.15-py2.py3-none-any.whl", hash = "sha256:fa1e92ffb55dbfb9fa92a2115a88c32481b75aa3fbd24075d1f29af2f9becffa"}, - {file = "moto-5.0.15.tar.gz", hash = "sha256:57aa8c2af417cc64a0ddfe63e5bcd1ada90f5079b73cdd1f74c4e9fb30a1a7e6"}, + {file = "moto-5.0.16-py2.py3-none-any.whl", hash = "sha256:4ce1f34830307f7b3d553d77a7ef26066ab3b70006203d4226b048c9d11a3be4"}, + {file = "moto-5.0.16.tar.gz", hash = "sha256:f4afb176a964cd7a70da9bc5e053d43109614ce3cab26044bcbb53610435dff4"}, ] [package.dependencies] @@ -1760,6 +1760,17 @@ dev = ["tokenizers[testing]"] docs = ["setuptools-rust", "sphinx", "sphinx-rtd-theme"] testing = ["black (==22.3)", "datasets", "numpy", "pytest", "requests", "ruff"] +[[package]] +name = "tomli" +version = "2.0.1" +description = "A lil' TOML parser" +optional = false +python-versions = ">=3.7" +files = [ + {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"}, + {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"}, +] + [[package]] name = "tqdm" version = "4.66.5" @@ -1885,4 +1896,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.11" -content-hash = "42ea278bed0d6ef83b60e61b4d648984a6c31113b682c3b79f6a2d5517660c7e" +content-hash = "499f96375940c9a93fadd4e6f91b91ed01b5a389bdbe7110df15c8358df9c15f" diff --git a/pyproject.toml b/pyproject.toml index bb9f202..a74c33d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,6 +14,7 @@ validators = "^0.33.0" boto3 = "^1.35.10" fastapi = "^0.115.0" uvicorn = "^0.30.6" +tomli = "^2.0.1" [tool.poetry.group.dev.dependencies] moto = "^5.0.13" diff --git a/transcode.py b/transcode.py index b68a252..29f3982 100644 --- a/transcode.py +++ b/transcode.py @@ -25,7 +25,7 @@ def try_transcode(input_path, asset_id, extension) -> Optional[TranscodeOutput]: provenance = { "activity_name": "Transcoding", "activity_description": "Checks if input needs transcoding, then transcodes if so", - "processing_time_ms": 0, + "processing_time_ms": -1, "start_time_unix": start_time, "parameters": [], "software_version": "", From 15a0d12e8f1584e7ebb998bab3bd33b2a3481238 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Drago=C8=99?= Date: Mon, 30 Sep 2024 11:20:31 +0200 Subject: [PATCH 49/54] black formatting --- asr.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/asr.py b/asr.py index 4b31d22..46b942f 100644 --- a/asr.py +++ b/asr.py @@ -28,12 +28,12 @@ def _get_project_meta(): - with open('pyproject.toml', mode='rb') as pyproject: - return tomli.load(pyproject)['tool']['poetry'] + with open("pyproject.toml", mode="rb") as pyproject: + return tomli.load(pyproject)["tool"]["poetry"] pkg_meta = _get_project_meta() -version = str(pkg_meta['version']) +version = str(pkg_meta["version"]) def run(input_uri: str, output_uri: str, model=None) -> bool: From da939eeec59b30e66ea21acb58c35d7a7b25d6ab Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Tue, 1 Oct 2024 16:08:11 +0200 Subject: [PATCH 50/54] remove unused flask lib references --- pyproject.toml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index a74c33d..af9feca 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -75,8 +75,6 @@ exclude = "misc" module = [ 'yaml', 'faster_whisper.*', - 'boto3.*', - "flask_restx", - "flask_cors" + 'boto3.*' ] ignore_missing_imports = true From 0281720dc4d64a0c96df0b2217acfd513b53c6b7 Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Tue, 1 Oct 2024 16:13:52 +0200 Subject: [PATCH 51/54] move hugging face env var to module where it is used --- asr.py | 2 -- whisper_api.py | 7 +++++++ 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/asr.py b/asr.py index 46b942f..86cce63 100644 --- a/asr.py +++ b/asr.py @@ -8,7 +8,6 @@ s3_endpoint_url, s3_bucket, s3_folder_in_bucket, - model_base_dir, w_word_timestamps, w_device, w_model, @@ -24,7 +23,6 @@ from daan_transcript import generate_daan_transcript, DAAN_JSON_FILE logger = logging.getLogger(__name__) -os.environ["HF_HOME"] = model_base_dir # change dir where model is downloaded def _get_project_meta(): diff --git a/whisper_api.py b/whisper_api.py index c8bd713..4537f02 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -1,4 +1,5 @@ import logging +import os from typing import Optional from uuid import uuid4 from fastapi import BackgroundTasks, FastAPI, HTTPException, status, Response @@ -17,8 +18,14 @@ api = FastAPI() logger.info(f"Loading model on device {w_device}") + + +# change hugging face home dir where model is downloaded +os.environ["HF_HOME"] = model_base_dir + # checking if model needs to be downloaded from HF or not model_location = model_base_dir if check_model_availability() else w_model + model = faster_whisper.WhisperModel( model_location, device=w_device, From 8144798a33cf274cfd6ba5d0b351a2d70f2d9613 Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Tue, 1 Oct 2024 16:39:12 +0200 Subject: [PATCH 52/54] centralized model download in new function in whisper.py --- model_download.py | 1 + whisper.py | 36 +++++++++++++++++++++++++----------- whisper_api.py | 21 +++------------------ 3 files changed, 29 insertions(+), 29 deletions(-) diff --git a/model_download.py b/model_download.py index 86a5a79..bed7e18 100644 --- a/model_download.py +++ b/model_download.py @@ -6,6 +6,7 @@ # makes sure the model is available locally, if not download it from S3, if that fails download from Huggingface +# FIXME should also check if the correct w_model type is available locally! def check_model_availability() -> bool: logger = logging.getLogger(__name__) if os.path.exists(model_base_dir + "/model.bin"): diff --git a/whisper.py b/whisper.py index e2d7d88..d730d22 100644 --- a/whisper.py +++ b/whisper.py @@ -6,6 +6,7 @@ from typing import Optional import faster_whisper +from faster_whisper import WhisperModel from config import ( model_base_dir, w_beam_size, @@ -24,21 +25,34 @@ logger = logging.getLogger(__name__) +# loads the whisper model +# FIXME does not check if the specific model_type is available locally! +def load_model(model_base_dir: str, model_type: str, device: str) -> WhisperModel: + logger.info(f"Loading Whisper model {model_type} for device: {device}") + + # change HuggingFace dir to where model is downloaded + os.environ["HF_HOME"] = model_base_dir + + # determine loading locally or have Whisper download from HuggingFace + model_location = model_base_dir if check_model_availability() else model_type + model = WhisperModel( + model_location, # either local path or e.g. large-v2 (means HuggingFace download) + device=device, + compute_type=( # float16 only works on GPU, float32 or int8 are recommended for CPU + "float16" if device == "cuda" else "float32" + ), + ) + logger.info(f"Model loaded from location: {model_location}") + return model + + def run_asr(input_path, output_dir, model=None) -> Optional[dict]: logger.info(f"Starting ASR on {input_path}") start_time = time.time() if not model: - logger.info(f"Device used: {w_device}") - # checking if model needs to be downloaded from HF or not - model_location = model_base_dir if check_model_availability() else w_model - model = faster_whisper.WhisperModel( - model_location, - device=w_device, - compute_type=( # float16 only works on GPU, float32 or int8 are recommended for CPU - "float16" if w_device == "cuda" else "float32" - ), - ) - logger.info("Model loaded, now getting segments") + logger.info("Model not passed as param, need to obtain it first") + model = load_model(model_base_dir, w_model, w_device) + logger.info("Processing segments") segments, _ = model.transcribe( input_path, vad_filter=w_vad, diff --git a/whisper_api.py b/whisper_api.py index 4537f02..a3b7af3 100644 --- a/whisper_api.py +++ b/whisper_api.py @@ -1,9 +1,9 @@ import logging -import os from typing import Optional from uuid import uuid4 from fastapi import BackgroundTasks, FastAPI, HTTPException, status, Response from asr import run +from whisper import load_model from enum import Enum from pydantic import BaseModel from config import ( @@ -11,29 +11,14 @@ w_device, w_model, ) -import faster_whisper -from model_download import check_model_availability logger = logging.getLogger(__name__) api = FastAPI() logger.info(f"Loading model on device {w_device}") - -# change hugging face home dir where model is downloaded -os.environ["HF_HOME"] = model_base_dir - -# checking if model needs to be downloaded from HF or not -model_location = model_base_dir if check_model_availability() else w_model - -model = faster_whisper.WhisperModel( - model_location, - device=w_device, - compute_type=( # float16 only works on GPU, float32 or int8 are recommended for CPU - "float16" if w_device == "cuda" else "float32" - ), -) -logger.info("Model loaded!") +# load the model in memory on API startup +model = load_model(model_base_dir, w_model, w_device) class Status(Enum): From ddf0295054bce8ed8f7f0200f1c8b2677d4b3a2b Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 2 Oct 2024 08:50:43 +0200 Subject: [PATCH 53/54] updated packages --- poetry.lock | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/poetry.lock b/poetry.lock index acc39e5..b6184a1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] name = "annotated-types" @@ -146,17 +146,17 @@ files = [ [[package]] name = "boto3" -version = "1.35.29" +version = "1.35.31" description = "The AWS SDK for Python" optional = false python-versions = ">=3.8" files = [ - {file = "boto3-1.35.29-py3-none-any.whl", hash = "sha256:2244044cdfa8ac345d7400536dc15a4824835e7ec5c55bc267e118af66bb27db"}, - {file = "boto3-1.35.29.tar.gz", hash = "sha256:7bbb1ee649e09e956952285782cfdebd7e81fc78384f48dfab3d66c6eaf3f63f"}, + {file = "boto3-1.35.31-py3-none-any.whl", hash = "sha256:2e9af74d10d8af7610a8d8468d2914961f116912a024fce17351825260385a52"}, + {file = "boto3-1.35.31.tar.gz", hash = "sha256:8c593af260c4ea3eb6f079c09908f94494ca2222aa4e40a7ff490fab1cee8b39"}, ] [package.dependencies] -botocore = ">=1.35.29,<1.36.0" +botocore = ">=1.35.31,<1.36.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.10.0,<0.11.0" @@ -165,13 +165,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.35.29" +version = "1.35.31" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">=3.8" files = [ - {file = "botocore-1.35.29-py3-none-any.whl", hash = "sha256:f8e3ae0d84214eff3fb69cb4dc51cea6c43d3bde82027a94d00c52b941d6c3d5"}, - {file = "botocore-1.35.29.tar.gz", hash = "sha256:4ed28ab03675bb008a290c452c5ddd7aaa5d4e3fa1912aadbdf93057ee84362b"}, + {file = "botocore-1.35.31-py3-none-any.whl", hash = "sha256:4cee814875bc78656aef4011d3d6b2231e96f53ea3661ee428201afb579d5c31"}, + {file = "botocore-1.35.31.tar.gz", hash = "sha256:f7bfa910cf2cbcc8c2307c1cf7b93495d614c2d699883417893e0a337fe4eb63"}, ] [package.dependencies] From 341fda0a88da15ad034544f44eed023ef22ee065 Mon Sep 17 00:00:00 2001 From: Jaap Blom Date: Wed, 2 Oct 2024 08:54:37 +0200 Subject: [PATCH 54/54] add prov to S3 output --- asr.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/asr.py b/asr.py index 86cce63..11e97b8 100644 --- a/asr.py +++ b/asr.py @@ -3,7 +3,12 @@ import time import tomli -from base_util import get_asset_info, asr_output_dir, save_provenance +from base_util import ( + get_asset_info, + asr_output_dir, + save_provenance, + PROVENANCE_JSON_FILE, +) from config import ( s3_endpoint_url, s3_bucket, @@ -164,6 +169,7 @@ def transfer_asr_output(output_path: str, asset_id: str) -> bool: [ os.path.join(output_path, DAAN_JSON_FILE), os.path.join(output_path, WHISPER_JSON_FILE), + os.path.join(output_path, PROVENANCE_JSON_FILE), ], )