From 891eaeab611f9e80a41e88771d7a912ab548800d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= <b.e.droge@rug.nl>
Date: Tue, 2 Jul 2024 21:16:55 +0200
Subject: [PATCH] adding easyconfigs: MultiQC-1.22.3-foss-2023b.eb,
 pydantic-2.7.4-GCCcore-13.2.0.eb

---
 .../m/MultiQC/MultiQC-1.22.3-foss-2023b.eb    |  80 +++++++++++
 .../pydantic/pydantic-2.7.4-GCCcore-13.2.0.eb | 126 ++++++++++++++++++
 2 files changed, 206 insertions(+)
 create mode 100644 easybuild/easyconfigs/m/MultiQC/MultiQC-1.22.3-foss-2023b.eb
 create mode 100644 easybuild/easyconfigs/p/pydantic/pydantic-2.7.4-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/m/MultiQC/MultiQC-1.22.3-foss-2023b.eb b/easybuild/easyconfigs/m/MultiQC/MultiQC-1.22.3-foss-2023b.eb
new file mode 100644
index 00000000000..ef34f8747cf
--- /dev/null
+++ b/easybuild/easyconfigs/m/MultiQC/MultiQC-1.22.3-foss-2023b.eb
@@ -0,0 +1,80 @@
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# Adam Huffman
+# The Francis Crick Institute
+# Elements derived from work by Pablo Escobar
+# sciCORE - University of Basel
+# SIB Swiss Institute of Bioinformatics 
+
+# Note that Click in Python 3 requires that you change your locale to unicode before invoking your Python script.
+# See: https://click.palletsprojects.com/en/7.x/python3/
+
+easyblock = 'PythonBundle'
+
+name = 'MultiQC'
+version = '1.22.3'
+
+homepage = 'https://multiqc.info'
+description = """Aggregate results from bioinformatics analyses across many samples into a single report.
+
+ MultiQC searches a given directory for analysis logs and compiles an HTML report. It's a general
+ use tool, perfect for summarising the output from numerous bioinformatics tools."""
+
+toolchain = {'name': 'foss', 'version': '2023b'}
+
+builddependencies = [('hatchling', '1.18.0')]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('Kaleido', '0.2.1'),
+    ('matplotlib', '3.8.2'),
+    ('plotly.py', '5.18.0'),
+    ('pydantic', '2.7.4'),
+    ('tqdm', '4.66.2'),
+    ('Pillow', '10.2.0'),
+    ('PyYAML', '6.0.1'),
+    ('networkx', '3.2.1'),
+]
+
+use_pip = True
+
+exts_list = [
+    ('colormath', '3.0.0', {
+        'checksums': ['3d4605af344527da0e4f9f504fad7ddbebda35322c566a6c72e28edb1ff31217'],
+    }),
+    ('humanfriendly', '10.0', {
+        'checksums': ['6b0b831ce8f15f7300721aa49829fc4e83921a9a301cc7f606be6686a2288ddc'],
+    }),
+    ('Markdown', '3.6', {
+        'checksums': ['ed4f41f6daecbeeb96e576ce414c41d2d876daa9a16cb35fa8ed8c2ddfad0224'],
+    }),
+    ('coloredlogs', '15.0.1', {
+        'checksums': ['7c991aa71a4577af2f82600d8f8f3a89f936baeaf9b50a9c197da014e5bf16b0'],
+    }),
+    ('humanize', '4.9.0', {
+        'checksums': ['582a265c931c683a7e9b8ed9559089dea7edcf6cc95be39a3cbc2c5d5ac2bcfa'],
+    }),
+    ('pyaml_env', '1.2.1', {
+        'checksums': ['6d5dc98c8c82df743a132c196e79963050c9feb05b0a6f25f3ad77771d3d95b0'],
+    }),
+    ('spectra', '0.0.11', {
+        'checksums': ['8eb362a5187cb63cee13cd01186799c0c791a3ad3bec57b279132e12521762b8'],
+    }),
+    ('typeguard', '4.3.0', {
+        'checksums': ['92ee6a0aec9135181eae6067ebd617fd9de8d75d714fb548728a4933b1dea651'],
+    }),
+    ('multiqc', version, {
+        'checksums': ['5f2cc3c417b5ed4ad57bdff02d93bb7f4c6e6677768ddad1cde7b9b1e04b5854'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/multiqc'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = ["multiqc --help"]
+
+sanity_pip_check = True
+
+moduleclass = 'bio'
diff --git a/easybuild/easyconfigs/p/pydantic/pydantic-2.7.4-GCCcore-13.2.0.eb b/easybuild/easyconfigs/p/pydantic/pydantic-2.7.4-GCCcore-13.2.0.eb
new file mode 100644
index 00000000000..efc3388a073
--- /dev/null
+++ b/easybuild/easyconfigs/p/pydantic/pydantic-2.7.4-GCCcore-13.2.0.eb
@@ -0,0 +1,126 @@
+easyblock = 'CargoPythonBundle'
+
+name = 'pydantic'
+version = '2.7.4'
+
+homepage = 'https://github.com/samuelcolvin/pydantic'
+description = """Data validation and settings management using Python type hinting."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+builddependencies = [
+    ('binutils', '2.40'),
+    ('Rust', '1.76.0'),
+    ('maturin', '1.5.0', '-Rust-1.76.0'),
+    ('hatchling', '1.18.0'),
+]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('typing-extensions', '4.10.0'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+crates = [
+    ('ahash', '0.8.10'),
+    ('aho-corasick', '1.0.2'),
+    ('autocfg', '1.1.0'),
+    ('base64', '0.21.7'),
+    ('bitflags', '1.3.2'),
+    ('bitvec', '1.0.1'),
+    ('cc', '1.0.79'),
+    ('cfg-if', '1.0.0'),
+    ('enum_dispatch', '0.3.13'),
+    ('equivalent', '1.0.1'),
+    ('form_urlencoded', '1.2.1'),
+    ('funty', '2.0.0'),
+    ('getrandom', '0.2.10'),
+    ('hashbrown', '0.14.3'),
+    ('heck', '0.4.1'),
+    ('idna', '0.5.0'),
+    ('indexmap', '2.2.2'),
+    ('indoc', '2.0.4'),
+    ('itoa', '1.0.8'),
+    ('jiter', '0.4.1'),
+    ('lexical-parse-float', '0.8.5'),
+    ('lexical-parse-integer', '0.8.6'),
+    ('lexical-util', '0.8.5'),
+    ('libc', '0.2.147'),
+    ('lock_api', '0.4.10'),
+    ('memchr', '2.6.3'),
+    ('memoffset', '0.9.0'),
+    ('num-bigint', '0.4.4'),
+    ('num-integer', '0.1.45'),
+    ('num-traits', '0.2.16'),
+    ('once_cell', '1.18.0'),
+    ('parking_lot', '0.12.1'),
+    ('parking_lot_core', '0.9.8'),
+    ('percent-encoding', '2.3.1'),
+    ('portable-atomic', '1.6.0'),
+    ('proc-macro2', '1.0.76'),
+    ('pyo3', '0.21.2'),
+    ('pyo3-build-config', '0.21.2'),
+    ('pyo3-ffi', '0.21.2'),
+    ('pyo3-macros', '0.21.2'),
+    ('pyo3-macros-backend', '0.21.2'),
+    ('python3-dll-a', '0.2.9'),
+    ('quote', '1.0.35'),
+    ('radium', '0.7.0'),
+    ('redox_syscall', '0.3.5'),
+    ('regex', '1.10.4'),
+    ('regex-automata', '0.4.5'),
+    ('regex-syntax', '0.8.2'),
+    ('rustversion', '1.0.13'),
+    ('ryu', '1.0.14'),
+    ('scopeguard', '1.1.0'),
+    ('serde', '1.0.203'),
+    ('serde_derive', '1.0.203'),
+    ('serde_json', '1.0.116'),
+    ('smallvec', '1.13.2'),
+    ('speedate', '0.14.0'),
+    ('static_assertions', '1.1.0'),
+    ('strum', '0.25.0'),
+    ('strum_macros', '0.25.3'),
+    ('strum_macros', '0.26.1'),
+    ('syn', '2.0.48'),
+    ('tap', '1.0.1'),
+    ('target-lexicon', '0.12.9'),
+    ('tinyvec', '1.6.0'),
+    ('tinyvec_macros', '0.1.1'),
+    ('unicode-bidi', '0.3.13'),
+    ('unicode-ident', '1.0.10'),
+    ('unicode-normalization', '0.1.22'),
+    ('unindent', '0.2.3'),
+    ('url', '2.5.0'),
+    ('uuid', '1.8.0'),
+    ('version_check', '0.9.4'),
+    ('wasi', '0.11.0+wasi-snapshot-preview1'),
+    ('windows-targets', '0.48.1'),
+    ('windows_aarch64_gnullvm', '0.48.0'),
+    ('windows_aarch64_msvc', '0.48.0'),
+    ('windows_i686_gnu', '0.48.0'),
+    ('windows_i686_msvc', '0.48.0'),
+    ('windows_x86_64_gnu', '0.48.0'),
+    ('windows_x86_64_gnullvm', '0.48.0'),
+    ('windows_x86_64_msvc', '0.48.0'),
+    ('wyz', '0.5.1'),
+    ('zerocopy', '0.7.32'),
+    ('zerocopy-derive', '0.7.32'),
+]
+
+exts_list = [
+    ('annotated_types', '0.6.0', {
+        'checksums': ['563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d'],
+    }),
+    ('pydantic_core', '2.18.4', {
+        'checksums': ['ec3beeada09ff865c344ff3bc2f427f5e6c26401cc6113d77e372c3fdac73864'],
+    }),
+    (name, version, {
+        'preinstallopts': "sed -i '/Framework :: Pydantic/d' pyproject.toml && ",
+        'checksums': ['0c84efd9548d545f63ac0060c1e4d39bb9b14db8b3c0652338aecc07b5adec52'],
+    }),
+]
+
+moduleclass = 'devel'