From 8d89efd1e6de6635b88a295aa95eee422104df42 Mon Sep 17 00:00:00 2001
From: rpletz <rpletz@bcgsc.ca>
Date: Thu, 12 Oct 2023 14:31:51 -0700
Subject: [PATCH 1/2] Add cancer_gene to gene

---
 app/models/reports/genes.js                   |  4 ++++
 ...3005-DEVSU-2038-add-cancer_gene-to-gene.js | 20 +++++++++++++++++++
 test/routes/report/gene.test.js               |  4 +++-
 3 files changed, 27 insertions(+), 1 deletion(-)
 create mode 100644 migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js

diff --git a/app/models/reports/genes.js b/app/models/reports/genes.js
index b1ec2ca05..7d0d0ed1d 100644
--- a/app/models/reports/genes.js
+++ b/app/models/reports/genes.js
@@ -31,6 +31,10 @@ module.exports = (sequelize, Sq) => {
       type: Sq.BOOLEAN,
       defaultValue: false,
     },
+    cancerGene: {
+      field: 'cancer_gene',
+      type: Sq.BOOLEAN,
+    },
     cancerRelated: {
       name: 'cancerRelated',
       field: 'cancer_related',
diff --git a/migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js b/migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js
new file mode 100644
index 000000000..164bc84dd
--- /dev/null
+++ b/migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js
@@ -0,0 +1,20 @@
+const TABLE = 'reports_genes';
+
+module.exports = {
+  up: async (queryInterface, Sq) => {
+    return queryInterface.sequelize.transaction(async (transaction) => {
+      await queryInterface.addColumn(
+        TABLE,
+        'cancer_gene',
+        {
+          type: Sq.INTEGER,
+        },
+        {transaction},
+      );
+    });
+  },
+
+  down: async () => {
+    throw new Error('Not Implemented!');
+  },
+};
diff --git a/test/routes/report/gene.test.js b/test/routes/report/gene.test.js
index ab9f0113c..ae25bffee 100644
--- a/test/routes/report/gene.test.js
+++ b/test/routes/report/gene.test.js
@@ -19,6 +19,7 @@ const GENE_DATA = {
   knownFusionPartner: true,
   therapeuticAssociated: true,
   knownSmallMutation: true,
+  cancerGene: true,
 };
 
 const GENE_UPDATE_DATA = {
@@ -30,12 +31,13 @@ const GENE_UPDATE_DATA = {
   knownFusionPartner: false,
   therapeuticAssociated: false,
   knownSmallMutation: false,
+  cancerGene: false,
 };
 
 const geneProperties = [
   'ident', 'createdAt', 'name', 'tumourSuppressor', 'oncogene',
   'cancerRelated', 'drugTargetable', 'knownFusionPartner',
-  'therapeuticAssociated', 'knownSmallMutation',
+  'therapeuticAssociated', 'knownSmallMutation', 'cancerGene',
 ];
 
 const checkGene = (geneObject) => {

From 124d6db08b91fa9255c5dbe03a045550eb9ee99f Mon Sep 17 00:00:00 2001
From: rpletz <rpletz@bcgsc.ca>
Date: Thu, 12 Oct 2023 14:38:11 -0700
Subject: [PATCH 2/2] Update cancer_gene type

---
 migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js b/migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js
index 164bc84dd..4574d3d9c 100644
--- a/migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js
+++ b/migrations/20231012213005-DEVSU-2038-add-cancer_gene-to-gene.js
@@ -7,7 +7,7 @@ module.exports = {
         TABLE,
         'cancer_gene',
         {
-          type: Sq.INTEGER,
+          type: Sq.BOOLEAN,
         },
         {transaction},
       );