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GO_annotation
GO_annotation
 
 
anno_files_sRNAs
anno_files_sRNAs
 
 
clusterProfiler
clusterProfiler
 
 
denovo_assemble_RNA-seq
denovo_assemble_RNA-seq
 
 
getSeqCovFig
getSeqCovFig
 
 
length_distribution
length_distribution
 
 
manage_ubuntu
manage_ubuntu
 
 
ncbi_download
ncbi_download
 
 
parse_BAM
parse_BAM
 
 
seq_cov_figures
seq_cov_figures
 
 
sort2bed
sort2bed
 
 
under_dev
under_dev
 
 
update_table
update_table
 
 
Align.pl
Align.pl
 
 
Name_ncRNA.pl
Name_ncRNA.pl
 
 
PttRnt2table.pl
PttRnt2table.pl
 
 
README.md
README.md
 
 
RescueTimeDataExporter.py
RescueTimeDataExporter.py
 
 
a2b.pl
a2b.pl
 
 
ascp_ncbi_download.pl
ascp_ncbi_download.pl
 
 
bac.log
bac.log
 
 
bacteria_20170714.txt
bacteria_20170714.txt
 
 
calGCwindow.pl
calGCwindow.pl
 
 
chk_feature2count.pl
chk_feature2count.pl
 
 
chk_feature_mapping.pl
chk_feature_mapping.pl
 
 
chk_filter_tags.pl
chk_filter_tags.pl
 
 
chk_find_tags.pl
chk_find_tags.pl
 
 
chk_parseBAM.pl
chk_parseBAM.pl
 
 
chk_parseBAM.v1.pl
chk_parseBAM.v1.pl
 
 
chk_select_sRNAs.pl
chk_select_sRNAs.pl
 
 
chk_seq2rnaz.pl
chk_seq2rnaz.pl
 
 
clean_txt_to_fa.pl
clean_txt_to_fa.pl
 
 
convert_wos.pl
convert_wos.pl
 
 
copy_raw_fastq.sh
copy_raw_fastq.sh
 
 
countGC.pl
countGC.pl
 
 
count_Kmer.sh
count_Kmer.sh
 
 
download_SRR_by_ascp.pl
download_SRR_by_ascp.pl
 
 
ext_homoseq.pl
ext_homoseq.pl
 
 
fasta_to_fastq.pl
fasta_to_fastq.pl
 
 
fasta_uniq2all.pl
fasta_uniq2all.pl
 
 
find_genomefeatures.pl
find_genomefeatures.pl
 
 
fmt_featureCounts_summary.pl
fmt_featureCounts_summary.pl
 
 
fq_all2std.pl
fq_all2std.pl
 
 
getGenomeFeatures.pl
getGenomeFeatures.pl
 
 
gridseqMain.sh
gridseqMain.sh
 
 
length_dis.pl
length_dis.pl
 
 
lncRNApipeline.pl
lncRNApipeline.pl
 
 
match.pl
match.pl
 
 
png_to_html.pl
png_to_html.pl
 
 
rbh_parse_blast.pl
rbh_parse_blast.pl
 
 
rbh_run_blast.pl
rbh_run_blast.pl
 
 
rbh_run_pairs.pl
rbh_run_pairs.pl
 
 
rbh_stat.pl
rbh_stat.pl
 
 
reads_to_tophat.pl
reads_to_tophat.pl
 
 
report_fc.pl
report_fc.pl
 
 
searchRfam.pl
searchRfam.pl
 
 
search_cov_regions.pl
search_cov_regions.pl
 
 
soap2cov.pl
soap2cov.pl
 
 
sort2bed.pl
sort2bed.pl
 
 
sort2candi.pl
sort2candi.pl
 
 
sort2circos.pl
sort2circos.pl
 
 
sort_to_position_sig.pl
sort_to_position_sig.pl
 
 
sra2fq.sh
sra2fq.sh
 
 
stat_feature_mapping.pl
stat_feature_mapping.pl
 
 
trim_reads_trimmomatic.pl
trim_reads_trimmomatic.pl
 
 
update_table.pl
update_table.pl
 
 
x2y.pl
x2y.pl
 
 
xxx.log
xxx.log
 
 

README.md

Date: 2015-12-24

Delete some of the Perl scripts

  • addNotes.pl Reason: function repeat with 'update_table.pl'

  • Align.pl Reason: