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bahanonu / ciatah Public

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Biafra Ahanonu edited this page Dec 17, 2018 · 5 revisions

Welcome to the calciumImagingAnalysis wiki!

Toggle table of contents Pages 13

Home
*Common issues and fixes
*Example pipeline
*Imaging analysis methods and code
Behavior: Animal tracking
Cross session cell alignment
Inscopix
Manual cell sorting of cell extraction outputs
Preprocessing: Improving SNR
Preprocessing: Motion Correction
Preprocessing: Spatial filtering
Preprocessing: Stripe removal from movies
Preprocessing: Temporal downsampling

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