From 3e30278f3442aa28704f0210493046197f93a54d Mon Sep 17 00:00:00 2001
From: Mike Hemesath <hemesath@amazon.com>
Date: Tue, 29 Aug 2023 17:32:10 -0500
Subject: [PATCH] Fixed linting errors

---
 omics/rerun/omics-rerun               | 15 ++++++++-------
 omics/uriparse/uri_parse.py           |  7 ++++++-
 tests/uriparse/unit/test_uri_parse.py |  8 ++++++--
 3 files changed, 20 insertions(+), 10 deletions(-)

diff --git a/omics/rerun/omics-rerun b/omics/rerun/omics-rerun
index 7a725cb..a198642 100755
--- a/omics/rerun/omics-rerun
+++ b/omics/rerun/omics-rerun
@@ -53,15 +53,16 @@ Examples:
  omics-rerun -d 1234567
 """
 import datetime
-import dateutil
-import botocore
-import docopt
-import boto3
-import time
 import json
-import sys
-import re
 import os
+import re
+import sys
+import time
+
+import boto3
+import botocore
+import dateutil
+import docopt
 
 exename = os.path.basename(sys.argv[0])
 
diff --git a/omics/uriparse/uri_parse.py b/omics/uriparse/uri_parse.py
index f9da3fb..d926c35 100644
--- a/omics/uriparse/uri_parse.py
+++ b/omics/uriparse/uri_parse.py
@@ -2,7 +2,11 @@
 
 import re
 
-from omics.common.omics_file_types import OMICS_URI_TYPE_FILENAME_MAP, OMICS_URI_TYPE_DEFAULT_FILENAME_MAP, OmicsFileType
+from omics.common.omics_file_types import (
+    OMICS_URI_TYPE_DEFAULT_FILENAME_MAP,
+    OMICS_URI_TYPE_FILENAME_MAP,
+    OmicsFileType,
+)
 
 
 class OmicsUri:
@@ -14,6 +18,7 @@ class OmicsUri:
     ex: omics://429915189008.storage.us-east-1.amazonaws.com/1981413158/readSet/5346184667/source1
     ex: omics://429915189008.storage.us-east-1.amazonaws.com/1981413158/reference/5346184667/source
     """
+
     URI_REGEX = r"omics://(\d{10,12})\.storage\.([a-z]{2}-[a-z-]{4,}-\d+)\.amazonaws\.com/(\d{10,36})/(readSet|reference)/(\d{10,36})(/(source[12]?|index))?$"
 
     def __init__(self, omics_uri):
diff --git a/tests/uriparse/unit/test_uri_parse.py b/tests/uriparse/unit/test_uri_parse.py
index 07581de..2decf18 100644
--- a/tests/uriparse/unit/test_uri_parse.py
+++ b/tests/uriparse/unit/test_uri_parse.py
@@ -1,8 +1,12 @@
 import unittest
 
 from omics.uriparse.uri_parse import OmicsUri, OmicsUriParser
-from tests.uriparse import VALID_READSET_URI, VALID_REFERENCE_URI
-from tests.uriparse import VALID_READSET_DEFAULT_FILE_URI, VALID_REFERENCE_DEFAULT_FILE_URI
+from tests.uriparse import (
+    VALID_READSET_DEFAULT_FILE_URI,
+    VALID_READSET_URI,
+    VALID_REFERENCE_DEFAULT_FILE_URI,
+    VALID_REFERENCE_URI,
+)
 
 
 class UriParserTest(unittest.TestCase):