build.xml

<project name="ApiCommonPresenters" default="Installation" basedir=".">


  <!-- in order to turn on parallel processing, need to uncomment this, and then the <foreach> task -->
  <!--
  <taskdef resource="net/sf/antcontrib/antcontrib.properties"/>
  -->

  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooo  Dependencies  oooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->

  <import file="${projectsDir}/ApiCommonWebService/build.xml" />
  <import file="${projectsDir}/ApiCommonDatasets/build.xml" />

 
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooo    Checkout    oooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->

  <target name="ApiCommonWebService-Checkout" unless="ApiCommonWebService.present"> 
    <ant target="defaultProjectCheckout" inheritAll="false"> 
      <property name="svnurl" value="https://cbilsvn.pmacs.upenn.edu/svn/apidb/ApiCommonWebService" />
      <property name="project" value="ApiCommonWebService"/>
      <property name="version" value="??"/>
    </ant>
  </target>    

  
  <target name="ApiCommonPresenters-ChildCheckout">
    <available file="../ApiCommonWebService" type="dir" property="ApiCommonWebService.present" />
    <available file="../ApiCommonDatasets" type="dir" property="ApiCommonDatasets.present" />
    <antcall target="ApiCommonWebService-Checkout" />
    <antcall target="ApiCommonDatasets-Checkout" />
  </target>
  
    <target name="ApiCommonDatasets-Checkout" unless="ApiCommonDatasets.present"> 
    <ant target="defaultProjectCheckout" inheritAll="false">
      <property name="svnurl" value="https://cbilsvn.pmacs.upenn.edu/svn/apidb/ApiCommonDatasets"/>
      <property name="project" value="ApiCommonDatasets"/>
      <property name="version" value="api-build-9"/>
      <property name="excludeChildren" value="true"/>
    </ant>
  </target>

  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooo    Update    oooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->

  <target name="ApiCommonPresenters-ChildUpdate" >
    <ant target="defaultProjectUpdate">
      <property name="project" value="ApiCommonWebService"/>
    </ant>
    <ant target="defaultProjectUpdate">
      <property name="project" value="ApiCommonDatasets"/>
      <property name="excludeChildren" value="true"/>
    </ant>
  </target>

  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooo  Installation  oooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->

  <target name="ApiCommonPresenters-Installation" depends="ApiCommonWebService-Installation,
                                            ApiCommonDatasets/Datasets-Installation,
  	                                        ApiCommonPresenters-MavenInstallation,
                                            ApiCommonPresenters/Model-Installation"  >

    <ant target="defaultProjectInstall">
      <property name="project" value="ApiCommonPresenters"/>
    </ant>
  </target>
	
	<target name="ApiCommonPresenters-MavenInstallation">
	  <ant target="mavenBuildProject">
	      <property name="project" value="ApiCommonPresenters"/>
	  </ant>
	  <property name="alreadyBuilt" value="true"/>
	</target>
   

  <!-- oooooooooooooooooo  Installation Postprocess  ooooooooooooooooooooo -->

  <target name="ApiCommonPresenters-Installation-postprocess">
    <echo message="Postprocessing the ApiCommonPresenters installation"/>

    <replace dir="${targetDir}/bin" 
             propertyFile="${targetDir}/config/replacements.prop" > 
      <include name="**/*" />
      <replacefilter token="@perl@" property="perl"/>
    </replace> 

  </target>


  <!-- ooooooooooooooooooooooo  Install Components  ooooooooooooooooooooooo -->


  <target name="ApiCommonPresenters/Model-Installation" depends="ProjectTree">

    <echo message="Making Dataset property files"/>
    <echo message="propertiesFromDatasets ApiCommonDatasets"/>
    <exec failonerror="true" executable="${targetDir}/bin/propertiesFromDatasets">
      <arg line="ApiCommonDatasets"/>
    </exec>

    <echo message="Making JBrowse Directories From prop files"/>
    <echo message="jbrowseFromDatasets"/>
    <exec failonerror="true" executable="${targetDir}/bin/jbrowseFromDatasets">
    </exec>


<!-- The following code process the properties files in parallel -->
<!--
    <exec failonerror="true" executable="${targetDir}/bin/datasetSchemaCheck">
      <arg line="ApiCommonDatasets"/>
    </exec>

    <foreach target="datasetToProp" param="datasetFile" parallel="true" maxThreads="10">
      <fileset dir="${projectsDir}/ApiCommonDatasets/Datasets/lib/xml/datasets/">
        <include name="**/*.xml"/>
        <exclude name="**/*Deprecated*"/>
      </fileset>
    </foreach>
-->

    <echo message="Injecting Templates"/>
    <echo message="presenterInjectTemplates -presentersDir ${projectsDir}/ApiCommonPresenters/Model/lib/xml/datasetPresenters -templatesDir ${projectsDir}/ApiCommonModel/Model/lib/dst -contactsXmlFile ${projectsDir}/ApiCommonPresenters/Model/lib/xml/datasetPresenters/contacts/contacts.xml -globalPresentersFile ${projectsDir}/ApiCommonModel/Model/lib/xml/datasetPresenters/global.xml"/>
    <exec failonerror="true" executable="${targetDir}/bin/presenterInjectTemplates">
      <arg line="-presentersDir ${projectsDir}/ApiCommonPresenters/Model/lib/xml/datasetPresenters -templatesDir ${projectsDir}/ApiCommonModel/Model/lib/dst -contactsXmlFile ${projectsDir}/ApiCommonPresenters/Model/lib/xml/datasetPresenters/contacts/contacts.xml  -globalPresentersFile ${projectsDir}/ApiCommonModel/Model/lib/xml/datasetPresenters/global.xml"/>
    </exec>

      <java failonerror="true" classname="org.eupathdb.common.model.ontology.OwlClassGenerator">
        <arg line="-path ${targetDir}/lib/wdk/ontology/ -inputFilename individuals.txt -outputFilename individuals.owl -ontoIRIstr 'http://purl.obolibrary.org/obo/eupath/category/individuals.owl'"/>
        <classpath>
          <pathelement location="${targetDir}/lib/java/ebrc-website-common-model-1.0.0.jar"/>
          <pathelement location="${targetDir}/lib/java/args4j-2.0.23.jar"/>
          <pathelement location="${targetDir}/lib/java/owlapi-distribution-3.5.0.jar"/>
          <pathelement location="${targetDir}/lib/java/log4j-1.2.17.jar"/>
          <pathelement location="${targetDir}/config/"/>
        </classpath>
      </java>


      <java failonerror="true" classname="org.eupathdb.common.model.ontology.OwlClassGenerator">
        <arg line="-path ${targetDir}/lib/wdk/ontology/ -inputFilename commonIndividuals.txt -outputFilename commonIndividuals.owl -ontoIRIstr 'http://purl.obolibrary.org/obo/eupath/category/commonIndividuals.owl'"/>
        <classpath>
          <pathelement location="${targetDir}/lib/java/ebrc-website-common-model-1.0.0.jar"/>
          <pathelement location="${targetDir}/lib/java/args4j-2.0.23.jar"/>
          <pathelement location="${targetDir}/lib/java/owlapi-distribution-3.5.0.jar"/>
          <pathelement location="${targetDir}/lib/java/log4j-1.2.17.jar"/>
          <pathelement location="${targetDir}/config/"/>
        </classpath>
      </java>


      <java failonerror="true" classname="org.eupathdb.common.model.ontology.EuPathAnnotPropAdder">
        <arg line="-path ${targetDir}/lib/wdk/ontology/ -inputFilename annotation.txt -outputFilename annotation.owl  -ontoIRIstr 'http://purl.obolibrary.org/obo/eupath/category/annotation.owl'"/>
        <classpath>
          <pathelement location="${targetDir}/lib/java/ebrc-website-common-model-1.0.0.jar"/>
          <pathelement location="${targetDir}/lib/java/args4j-2.0.23.jar"/>
          <pathelement location="${targetDir}/lib/java/owlapi-distribution-3.5.0.jar"/>
          <pathelement location="${targetDir}/lib/java/log4j-1.2.17.jar"/>
          <pathelement location="${targetDir}/config/"/>
        </classpath>
      </java>


      <java failonerror="true" classname="org.eupathdb.common.model.ontology.OntologyMerger">
        <arg line="-path ${targetDir}/lib/wdk/ontology/ -inputFilename categories_full.owl -outputFilename categories_merged.owl"/>
        <classpath>
          <pathelement location="${targetDir}/lib/java/ebrc-website-common-model-1.0.0.jar"/>
          <pathelement location="${targetDir}/lib/java/args4j-2.0.23.jar"/>
          <pathelement location="${targetDir}/lib/java/owlapi-distribution-3.5.0.jar"/>
          <pathelement location="${targetDir}/lib/java/log4j-1.2.17.jar"/>
          <pathelement location="${targetDir}/config/"/>
        </classpath>
      </java>


    <!--  Not needed -->
    <ant target="defaultComponentInstall">
      <property name="project" value="ApiCommonPresenters"/>
      <property name="component" value="Model"/>
    </ant>



    <!-- call a command to resolve out-dated master files -->
<!--
    <exec executable="workflowResolveAll">
    </exec>
-->

  </target>  

  <target name="datasetToProp">
    <exec failonerror="true" executable="${targetDir}/bin/propertyFromDataset">
      <arg line="${datasetFile}"/>
    </exec>
  </target>
 
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooo  Web Installation  oooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->
  <target name="ApiCommonPresenters-WebInstallation" depends="ApiCommonWebsite-WebInstallation,
                                                           ApiCommonWebService-Installation,
                                                           ApiCommonPresenters/Site-WebInstallation,
                                                           ApiCommonPresenters-Installation">
  </target>

  <target name="ApiCommonPresenters/Site-WebInstallation">
    <ant target="defaultWebComponentInstall">
      <property name="project" value="ApiCommonPresenters"/>
      <property name="component" value="Site"/>
    </ant>
  </target>



  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooo  Distributable  ooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->

  <target name="ApiCommonPresenters-Distributable" depends="ProjectTree">

    <copy todir="${targetDir}">
      <fileset dir="${projectsDir}" >
        <exclude name="**/CVS/*" />
      </fileset>
    </copy>  
  </target>  


  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooo  ProjectTree  ooooooooooooooooooooooooooo -->
  <!-- oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo -->

  <target name="ProjectTree" if="${checkout}">
    <ant target="projectCheckOut"/>
  </target>  

</project>