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dendrogram calculation issue #149

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DiracZhu1998 opened this issue Jul 5, 2024 · 0 comments
Open

dendrogram calculation issue #149

DiracZhu1998 opened this issue Jul 5, 2024 · 0 comments

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@DiracZhu1998
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Dear Mr. Tarashansky,

Thank you for your brilliant toolkit! It works well! I was wondering which element in the sm.samap.adata do you think can be used to calculate hierarchical clustering, the connectivities (obsp) and umap information (obsm['X_umap']) could be used but are not reasonable. Based on your tool, if I want to plot a hierarchical clustering for the integrated atlas at the cluster level, what should I do?

I appreciate your help!

Best wish,
YZ

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