Reproducibility and seeding

[dariotommasini]

Hi @atarashansky,

Thank you for this great tool! I noticed that there is a degree of randomness to the sm.run function. I get slightly different values for the correlation homology graph scores from sm.query_gene_pairs and the alignment scores from each iteration vary slightly. Can we supply a seed to make the output consistent?

Thanks!
Dario

[dariotommasini]

Hi @atarashansky. I hope you're doing well. I'm reopening this because I think it's still relevant.