From 493baee55452a7d627696eade410e5ea764b2623 Mon Sep 17 00:00:00 2001 From: rambaut Date: Mon, 26 Aug 2024 16:01:09 +0100 Subject: [PATCH] Adding credits --- .../mpxv-illumina-bioinformatics-epi2me-sop.md | 17 +++++++++++------ 1 file changed, 11 insertions(+), 6 deletions(-) diff --git a/_resources/mpxv/mpxv-illumina-bioinformatics-epi2me-sop.md b/_resources/mpxv/mpxv-illumina-bioinformatics-epi2me-sop.md index be0ff4d..3681874 100644 --- a/_resources/mpxv/mpxv-illumina-bioinformatics-epi2me-sop.md +++ b/_resources/mpxv/mpxv-illumina-bioinformatics-epi2me-sop.md @@ -25,9 +25,15 @@ category: mpxv-epi2me type='default' content="**Overview:** This document walks-through how to install and run a bioinformatics pipeline for analysing Illumina data generated from the ARTIC amplicon protocol within the ONT EPI2ME desktop software." %} -## Background -Nextflow Pipeline created by: +## Credits / Acknowledgements + +This pipeline is based on the [BCCDC-PHL/ncov2019-artic-nf](https://github.com/BCCDC-PHL/ncov2019-artic-nf) pipeline, which is a fork of the [connor-lab/ncov2019-artic-nf](https://github.com/connor-lab/ncov2019-artic-nf) pipeline. It has been modified here to support analysis of monkeypox virus. This pipeline is possible due to the ongoing efforts of many people developing and maintaining bioinformatics software. For a complete list of acknowledgments please see the documentation on the pipeline Github repository: [https://github.com/artic-network/artic-mpxv-nf](https://github.com/artic-network/artic-mpxv-illumina-nf/blob/master/README.md) + +--- + +## Using the ARTIC MPXV analysis pipeline in EPI2ME +
**Requirements:** @@ -35,14 +41,13 @@ Nextflow Pipeline created by: * Internet access to download the pipeline, and for the first time running it. After that, you should be able to run it offline. * Details about how the data was generated including the primer scheme used. ---- - ### **Import the workflow** -Open EPI2ME. On the main dashboard select “View workflows”. +Open EPI2ME. On the main dashboard select “View workflows”: + -Then select “Import workflow”. +Then select “Import Workflow”: