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Redundant -prefix option in demultiplexing command #7

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rambaut opened this issue Jun 9, 2018 · 0 comments
Open

Redundant -prefix option in demultiplexing command #7

rambaut opened this issue Jun 9, 2018 · 0 comments
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bioinformatics-sop bug Something isn't working
Milestone
v1.0.0

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@rambaut
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rambaut commented Jun 9, 2018

In the step Demultiplex with Porechop with stringent settings the command:

artic demultiplex --threads 4 --prefix run_name_final run_name_all.fastq

ignores the --prefix run_name_final option and instead names the output files using the stem of the input file (i.e., run_name_all-BC01.fastq etc).

Remove --prefix command-line option from this command?
@rambaut rambaut added bug Something isn't working bioinformatics-sop labels Jun 9, 2018
@rambaut rambaut added this to the v1.0.0 milestone Jun 9, 2018
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