FASTA has more than one sequence

[rebeelouise]

This is probably obvious, but I have gone from using the SARS-CoV-2 pipeline back to Ebola, and when I set up the pipeline to analyse ebola sequencing reads, the reference file has multiple fasta sequences and therefore presents the error"

FASTA has more than one sequence

I am using the PanEBOV V3 primers - is it up to the user to choose the reference at this stage or am I missing something in the pipeline?

Cheers :)

[nickloman]

It looks like we've included all the genomes in the supplied PanEBOV reference (https://github.com/artic-network/artic-ebov/tree/master/primer_schemes/PanEBOV/V3). This needs fixing: for now you can manually edit this file and remove everything except the first sequence.