diff --git a/response.md b/response.md deleted file mode 100644 index 9d679e5..0000000 --- a/response.md +++ /dev/null @@ -1,76 +0,0 @@ -# Corrections responses - -1. Clarify relation between the form factor P(q) and the intensity I(q) (maybe not needed when missing page will be included in the all document page 24-26 - -This is clarified in the missing pages (see Pages 26-28) - -2. Clarify the difference between model-dependent and model independent methods page 24 - -The following sentences have been added to page 24: - - ``` -All types of scattering patterns can be analysed by two analysis methods; model independent and model-dependent. -Model-independent analysis is where there is no \emph{a priori} information used in the analysis, when there are no assumptions made about the underlaying structure of the sample. -However, model-dependent analysis is when reasonable assumptions are made about the structure before the analysis is considered. -``` - -3. Define Ackley function page 33. - -Moved the introduction of the ackley function to the end of the paragraph and added the following: - -``` -The Ackley function is a common function used for assessing the utility of global optimisation functions, which has the following form in the two-dimensional case, -% -\begin{equation} -f(x,y) = -a \exp{\big[-b\sqrt{0.5(x^2 + y^2)}\big]} - \exp{\big[0.5(\cos{cx} + \cos{cy})\big]} + e + a, -\end{equation} -where, $a$, $b$, and $c$ are constants defined by the user, and $e$ is the base of the natural logarithm. -``` - -4. Page 37. Clarify what is meant by "dynamically relevant structure" - -Changed `dynamically` to `thermodynamically` - -5. Equation 3.1 page 44, clarify the fitting variables and how the various structural parameters reported in table 3.1 are then obtained (reference to the relevant equation in the reflectometry chapter.) - -The following has added following Equation 3.1 - -``` -The scattering length for the head or tail of the phospholipid can be found based on the different atom types present in each. -Therefore, the volume and solvation fraction are variables that may be fitted to give value for the SLD that may be used in Equation~\ref{equ:knsld}. -``` - -Additionally the following has be added to paragraph 4 of page 48 (in the old version) - -``` -Therefore, the $\text{SLD}_i$ in Equation~\ref{equ:sld} may be found and used in Equation~\ref{equ:knsld}, while the layer thickness may be used in Equation~\ref{equ:nowthick} to calculate the reflected intensity from a given layer. -``` - -6. Page 44 – define what you mean by "Chemically consistent modelling" - -The following sentences have been added to the chemically-consistent modelling section - -``` -Chemically-consistent modelling, in reflectometry analysis, is the reparameterisation of the layer-model into rational chemical terms, such as molecular volume and the elemental scattering lengths. -This reparameterisation allows for chemically-realistic constraints to be applied to the model. -``` - -7. P59 Figure 3.6 label a-d. - -The labels on these figures were small (in the top left corner), the size has been increased. - -8. Page 78 write the Tanford equation - -The following has been added to the tanford equation side note - -``` -which has the form $t_t = (1.5 + 1.265)n_c$ \AA, where $t_t$ is the length and $n_c$ is the number of carbon atoms -``` - -9. Page 94 Figure 5.7 caption: info on sample (concentration, solvent) - -Figure caption changed to - -``` -The experimental SANS data, from a solution of hydrogenated \ce{C_{10}TANO_3} in \ce{D2O} at a concentration of \SI{\sim0.15}{\mol\deci\meter^{-3}}, to which the real \texttt{fitoog} run was attempting to fit. -``` \ No newline at end of file