Sequential Alignment

[DruncBread]

Hi,

Would you mind providing tutorial for sequential alignment?
Like slice1 align to slice0, slice2 align to slice1, slice3 align to slice2 and so forth....

Thank you!

Best regards.

[YifanLu2000]

Hi @DruncBread, we have a comprehensive tutorial that should help address your sequential alignment needs: 3D Reconstruction with Pairwise Alignment on Drosophila Data.

Alternatively, you can directly process multiple slices using st.align.morpho_align function, the function will automatically perform the sequential alignment, that is, slice1 aligns to slice0, slice2 aligns to slice1... Here's a quick reference:

align_slices, pis = st.align.morpho_align(
    models=slices,  # slices should be a list containing slice1, slice2, slice3...
    # ... other parameters ...
) # align_slices will contain the aligned spatial coordinates

[DruncBread]

Hi,

Thank you for your reply. I will see the tutorial. Thank you very much for your guidance!

Best regards.