diff --git a/test/instantiation/test_instantiate_all_pipelines.py b/test/instantiation/test_instantiate_all_pipelines.py index 161eaa335..40c08c437 100644 --- a/test/instantiation/test_instantiate_all_pipelines.py +++ b/test/instantiation/test_instantiate_all_pipelines.py @@ -77,7 +77,7 @@ def run_create_dartel(base_dir: Path, output_dir: Path, working_dir: Path) -> No caps_directory=fspath(tmp_dir / "caps"), tsv_file=fspath(input_dir / "subjects.tsv"), base_dir=fspath(working_dir), - parameters={"group_label": "UnitTest"}, + group_label="UnitTest", ).build() @@ -96,7 +96,7 @@ def run_dartel_to_mni(base_dir: Path, output_dir: Path, working_dir: Path) -> No caps_directory=fspath(tmp_dir / "caps"), tsv_file=fspath(input_dir / "subjects.tsv"), base_dir=fspath(working_dir), - parameters={"group_label": "UnitTest"}, + group_label="UnitTest", ).build() @@ -115,7 +115,7 @@ def run_register_dartel(base_dir: Path, output_dir: Path, working_dir: Path) -> caps_directory=fspath(tmp_dir / "caps"), tsv_file=fspath(input_dir / "subjects.tsv"), base_dir=fspath(working_dir), - parameters={"group_label": "UnitTest"}, + group_label="UnitTest", ).build() @@ -135,7 +135,7 @@ def test_instantiate_t1_volume_parcellation(cmdopt, tmp_path): caps_directory=fspath(tmp_dir / "caps"), tsv_file=fspath(input_dir / "subjects.tsv"), base_dir=fspath(working_dir), - parameters={"group_label": "UnitTest"}, + group_label="UnitTest", ).build() @@ -229,8 +229,8 @@ def run_pet_volume(base_dir: Path, output_dir: Path, working_dir: Path) -> None: caps_directory=fspath(tmp_dir / "caps"), tsv_file=fspath(input_dir / "subjects.tsv"), base_dir=fspath(working_dir), + group_label="UnitTest", parameters={ - "group_label": "UnitTest", "acq_label": Tracer.FDG, "suvr_reference_region": SUVRReferenceRegion.PONS, "skip_question": True, @@ -275,8 +275,8 @@ def test_instantiate_statistics_surface(cmdopt, tmp_path): caps_directory=fspath(tmp_dir / "caps"), tsv_file=fspath(input_dir / "subjects.tsv"), base_dir=fspath(working_dir), + group_label="UnitTest", parameters={ - "group_label": "UnitTest", "orig_input_data": "t1-freesurfer", "glm_type": "group_comparison", "contrast": "group", @@ -425,10 +425,8 @@ def test_instantiate_spatial_svm(cmdopt, tmp_path): caps_directory=fspath(tmp_dir / "caps"), tsv_file=fspath(input_dir / "subjects.tsv"), base_dir=fspath(working_dir), - parameters={ - "group_label": "ADNIbl", - "orig_input_data_ml": "t1-volume", - }, + group_label="ADNIbl", + parameters={"orig_input_data_ml": "t1-volume"}, ).build() @@ -503,8 +501,8 @@ def test_instantiate_statistics_volume(cmdopt, tmp_path): caps_directory=fspath(tmp_dir / "caps"), tsv_file=fspath(input_dir / "group-UnitTest_covariates.tsv"), base_dir=fspath(working_dir), + group_label="UnitTest", parameters={ - "group_label": "UnitTest", "orig_input_data_volume": "pet-volume", "contrast": "group", "acq_label": Tracer.FDG,