From 30813a36b6da3f6d99e5b74ff06e0c2d538ac991 Mon Sep 17 00:00:00 2001
From: Vaclav Hanzl <64649594+vaclavhanzl@users.noreply.github.com>
Date: Sat, 27 Apr 2024 19:45:44 +0200
Subject: [PATCH 1/2] Fix Colab by using OF commit from pl_upgrades

The commit used so far now fails with Colab's numpy.
(Commit from current main does not work either.)
---
 notebooks/OpenFold.ipynb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/notebooks/OpenFold.ipynb b/notebooks/OpenFold.ipynb
index 8a844652..814ab98c 100644
--- a/notebooks/OpenFold.ipynb
+++ b/notebooks/OpenFold.ipynb
@@ -136,7 +136,7 @@
         "\n",
         "    %shell mkdir -p /content/openfold/openfold/resources\n",
         "\n",
-        "    commit = \"e2e19f16676b1a409f9ba3a6f69b11ee7f5887c2\"\n",
+        "    commit = \"49ab0539547b9ae921d8bc7c2beb106e085fc3cf\"\n",
         "    os.system(f\"pip install -q git+https://github.com/aqlaboratory/openfold.git@{commit}\")\n",
         "\n",
         "    os.system(f\"cp -f -p /content/stereo_chemical_props.txt /usr/local/lib/python{python_version}/site-packages/openfold/resources/\")\n",

From a3c131904b439010a2249c2644cc535a3c113dbd Mon Sep 17 00:00:00 2001
From: Jennifer Wei <97625454+jnwei@users.noreply.github.com>
Date: Mon, 13 May 2024 15:13:55 +0700
Subject: [PATCH 2/2] Update OpenFold.ipynb to newest pl_upgrades commit

---
 notebooks/OpenFold.ipynb | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/notebooks/OpenFold.ipynb b/notebooks/OpenFold.ipynb
index 814ab98c..01d54466 100644
--- a/notebooks/OpenFold.ipynb
+++ b/notebooks/OpenFold.ipynb
@@ -136,7 +136,7 @@
         "\n",
         "    %shell mkdir -p /content/openfold/openfold/resources\n",
         "\n",
-        "    commit = \"49ab0539547b9ae921d8bc7c2beb106e085fc3cf\"\n",
+        "    commit = \"3bec3e9b2d1e8bdb83887899102eff7d42dc2ba9\"\n",
         "    os.system(f\"pip install -q git+https://github.com/aqlaboratory/openfold.git@{commit}\")\n",
         "\n",
         "    os.system(f\"cp -f -p /content/stereo_chemical_props.txt /usr/local/lib/python{python_version}/site-packages/openfold/resources/\")\n",
@@ -916,4 +916,4 @@
   },
   "nbformat": 4,
   "nbformat_minor": 0
-}
\ No newline at end of file
+}