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.travis.yml
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.travis.yml
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cache:
pip: true
directories:
- $HOME/.cache/pip
- $HOME/.local
language: python
matrix:
include:
- os: linux
python: 3.6
- os: osx
language: generic
install:
# We do this conditionally because it saves us some downloading if the
# version is the same.
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
curl https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh > miniconda.sh;
export TRAVIS_PYTHON_VERSION="3.6";
else
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
fi
- bash miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda config --add channels conda-forge
# Need to install setuptools via conda, otherwise the update tries to uninstall it
- conda install setuptools
- conda update -q conda
- conda info -a
- conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
- source activate test-environment
# We shouldn't need to do this, but we get compile failures otherwise as the
# gcc we're looking for is missing.
- if [[ "$TRAVIS_OS_NAME" != "osx" ]]; then
conda install -c conda-forge gxx_linux-64;
fi
- conda install --yes --file=python/requirements/conda-minimal.txt
- conda install -c bioconda --yes pysam
# codecov requires a more recent version of certifi, but we can't uninstall the old one
# see https://github.com/tskit-dev/tskit/issues/366
- pip install --ignore-installed certifi
- pip install -r python/requirements/development.txt
- pip install -e python
script:
- nosetests -vs tests