Fixed the tox and pyproject settings for numpy 2

[liferoad]

Addresses #32681 and fixes the failed tests in. https://github.com/apache/beam/actions/runs/11278619395/job/31367491096

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[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 58.91%. Comparing base (02e0b3a) to head (d629485).
Report is 35 commits behind head on master.

Additional details and impacted files

@@             Coverage Diff              @@
##             master   #32745      +/-   ##
============================================
+ Coverage     58.84%   58.91%   +0.06%     
  Complexity     3091     3091              
============================================
  Files          1130     1130              
  Lines        174103   174399     +296     
  Branches       3312     3312              
============================================
+ Hits         102451   102747     +296     
  Misses        68326    68326              
  Partials       3326     3326              

Flag	Coverage Δ
python	81.48% <ø> (+0.07%)	⬆️

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