covidmvp_timeseries_params.yaml

prefix: "covidmvp-2024-03-19-3months"
gene_alias: "assets/virus_genomeAnnotation/NC_045512.2/NC_045512.2_key.json"
mode: "reference"
grouping_criteria: "time"
viralai: true
virusseq: true
virusseq_update: false
skip_classification: true
skip_postprocessing: true
skip_harmonize: false
start_date: "2023-12-25"
end_date: "2024-03-25"
metadata_source: "ViralAi_EpiCoV"
metadata_config: "assets/metadata_conf/metadata.yaml"
outdir: "results/covidmvp"