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osmo$ppi is [link x (in,out)] where values are numeric (not name) row index in osmo$exp
osmo$exp is [observations x samples] - the documentation states [nodes x observations], but the way I interpret it nodes and observations are the same thing
Is this correct?
The text was updated successfully, but these errors were encountered:
I created the ICMg model more than five year ago, so can not recall the details and can not suggest anything else than following the examples as closely as possible.
If you could give a reproducible example with your own data, I might be able to help more.
I'm trying to build an
ICMg
model where my network is anigraph
object, but the function only takes matrices as network objects.So I tried using the same code that is used by
detect.response
to convert one to the other:However, this fails - and I'm not sure why.
For the conversion, I assumed the following:
my_expression_matrix
is [samples x observations]network
can be anyigraph
objectosmo$ppi
is [link x (in,out)] where values are numeric (not name) row index inosmo$exp
osmo$exp
is [observations x samples] - the documentation states [nodes x observations], but the way I interpret it nodes and observations are the same thingIs this correct?
The text was updated successfully, but these errors were encountered: