test-gwas-additive-chunking.conf

/*
========================================================================================
    Nextflow config file for running tests
========================================================================================
*/

     params {
            project                       = 'test-gwas-additive-2chromosomes'
            genotypes_prediction          = "$projectDir/tests/input/pipeline/example.{bim,bed,fam}"
            genotypes_association         = "$projectDir/tests/input/pipeline/example*.bgen"
            genotypes_build               = 'hg19'
            genotypes_association_format  = 'bgen'
            phenotypes_filename           = "$projectDir/tests/input/pipeline/phenotype.txt"
            phenotypes_binary_trait       = false
            phenotypes_columns            = 'Y1,Y2'
            genotypes_association_chunk_size = 500000
            regenie_test                  = 'additive'
            rsids_filename                = "$projectDir/tests/input/pipeline/rsids.tsv.gz"
            annotation_min_log10p         = 2
        }

process {
    withName: '.*' {
        cpus = 1
        memory = 1.GB
    }
}