This web app is a graphical interface for the nextflow-bcl pipeline. The pipeline runs in a docker container by default.
It executes the Illumina programs InterOp summary and bcl2fastq, saves the fastq files in results-bcl/fastq/, and generates a MultiQC report in results-bcl. The input is an Illumina run folder (with bcl files) and a SampleSheet.csv file.
Tips:
- You can always restart the app by clicking on the nextflow-bcl title
- The number of cores used is determined dynamically based on available cores and number of samples in sample sheet
- You can start the run with Nextflow Tower, then go to the provided url and monitor it there!