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Product backlog #1

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10 of 11 tasks
JLrumberger opened this issue Jan 20, 2024 · 0 comments
Open
10 of 11 tasks

Product backlog #1

JLrumberger opened this issue Jan 20, 2024 · 0 comments
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enhancement New feature or request

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@JLrumberger
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JLrumberger commented Jan 20, 2024 •
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Description of feature

Nimbus inference repo

  • Convert weights from tf to torch with ivy

Nimbus inference class

  • Adapt from class from Nimbus repo
  • Add tile & stitch inference
  • Add different data source structures (i.e. ome-tiff directories)
  • Add inference notebook comparable to this one
  • Add easy-to-use and hackable commandline interface

Viewer Widget

  • Add viewer widget from here
  • Make viewer widget work with less than three channels
  • Build a second viewer widget with channels on the left, instance map on the right and all cells gray except the one we're interested in in white.

General project

  • Make the data available (EMBL)
  • Clean up plot notebooks
@JLrumberger JLrumberger added the enhancement New feature or request label Jan 20, 2024
@JLrumberger JLrumberger changed the title Product backlong Product backlog Feb 29, 2024
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@JLrumberger