README.md

ProjWeb_GenomeAnnot

Emeline Bruyère¹, Anaëlle Cossard¹, Elora Vigo¹ and Alexis Michalowski-Skarbek¹
_{1. Université Paris-Saclay}

Master 2 Web Project for functional annotation and analysis of bacterial genomes. The goal was to produce a website allowing users to create an account with different roles and differents actions associted. The website enables to look at the database, visualize genomes, get the list of genes and peptides associated etc. Users can upload information to the database using a formular with fasta files.

Requirements

Django version 4.2.7.

• biopython==1.83

• django-bootstrap3==23.6

• django-filter==23.5

• django-tables2==2.7.0

• plotly==5.18.0

-> See the requirements.txt file for details

How-to use

• Go to the GenomeAnnot directory :

cd GenomeAnnot

• To create the database :

python manage.py migrate

• To init the database with 2 genomes :

python manage.py init-my-data

• To run the website :

python manage.py runserver --insecure