bashrc_dev

#                          - BIOBASH BASHRC FILE FOR DEVELOPMENT -
#
# This file was created to be sourced while developing BIOBASH.
# Since usually there is not installation when developing BIOBASH, sourcing this
# file will allow to set all necessary variables to have BIOBASH running as if it were installed.
# Actually, all variables in this file are the same variables that are set during BIOBASH
# installation.
#


#....................................................................
#
# Routine to detect the OS
#
#....................................................................
uname=$(command -v uname)
case $("${uname}" | tr '[:upper:]' '[:lower:]') in
    linux*)
        os="linux"
        ;;
    darwin*)
        os="osx"
        ;;
    msys* | cygwin* | mingw* | nt | win*)
        # or possible 'bash on windows'
        os="windows"
        ;;
    *)
        return 1
        ;;
esac

#....................................................................
#
# Probably you'll want to modify these two lines.
#
#....................................................................
BIOBASH_HOME="${HOME}/Dev/repo/BB2"
BIOBASH_CORES=2


#....................................................................
#
# ¡¡¡DO NOT TOUCH BELOW UNLESS YOU KNOW WHAT UR DOING!!!
#
#....................................................................
BIOBASH_OS=${os}

BIOBASH_LIB=$BIOBASH_HOME/lib 
BIOBASH_BIN=$BIOBASH_HOME/bin
BIOBASH_BIN_OS="$BIOBASH_HOME/bin/${os}/64"
BIOBASH_BIN_ALL=$BIOBASH_HOME/bin/all

SHML_LIB=$BIOBASH_HOME/lib/shml/shml.sh
BASHUTILITY_LIB_PATH=$BIOBASH_HOME/lib/bb_utility
BASHUTILITY_LIB=$BIOBASH_HOME/lib/bbutility.sh
BIOBASH_NATIVE_LIB_PATH=$BIOBASH_HOME/lib/Bio
BIOBASH_NATIVE_LIB=$BIOBASH_HOME/lib/biobash.sh
BIOBASH_EXEC=$BIOBASH_HOME/exec


export BIOBASH_HOME
export BIOBASH_LIB
export BIOBASH_BIN
export BIOBASH_OS
export BIOBASH_BIN_OS
export BIOBASH_BIN_ALL
export SHML_LIB
export BASHUTILITY_LIB_PATH
export BASHUTILITY_LIB
export BIOBASH_NATIVE_LIB_PATH
export BIOBASH_NATIVE_LIB
export BIOBASH_CORES
export BIOBASH_EXEC


export PATH=/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin