setup.py

#!/usr/bin/env python

# ----------------------------------------------------------------------------
# Copyright (c) 2015--, calour development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ----------------------------------------------------------------------------

from setuptools import find_packages, setup

import re
import ast


# version parsing from __init__ pulled from Flask's setup.py
# https://github.com/mitsuhiko/flask/blob/master/setup.py
_version_re = re.compile(r'__version__\s+=\s+(.*)')

with open('dbbact_calour/__init__.py', 'rb') as f:
    hit = _version_re.search(f.read().decode('utf-8')).group(1)
    version = str(ast.literal_eval(hit))

classifiers = [
    'Development Status :: 4 - Beta',
    'License :: OSI Approved :: BSD License',
    'Environment :: Plugins',
    'Topic :: Software Development :: Libraries :: Application Frameworks',
    'Topic :: Scientific/Engineering',
    'Topic :: Scientific/Engineering :: Bio-Informatics',
    'Programming Language :: Python',
    'Programming Language :: Python :: 3',
    'Programming Language :: Python :: 3.6',
    'Programming Language :: Python :: 3.7',
    'Programming Language :: Python :: 3.8',
    'Operating System :: Unix',
    'Operating System :: POSIX',
    'Operating System :: MacOS :: MacOS X',
    'Operating System :: Microsoft :: Windows']


description = 'dbbact-calour is a Calour (https://github.com/biocore/calour) interface for dbBact (dbbact.org)'

with open('README.md') as f:
    long_description = f.read()

keywords = 'microbiome calour dbbact database analysis bioinformatics',

setup(name='dbbact-calour',
      version=version,
      license='BSD',
      description=description,
      long_description=long_description,
      keywords=keywords,
      classifiers=classifiers,
      author="calour development team",
      maintainer="calour development team",
      url='https://github.com/amnona/dbbact-calour',
      test_suite='nose.collector',
      packages=find_packages(),
      package_data={'dbbact_calour': ['data/*.pickle', 'log.cfg', 'ui/*.ui']},
      python_requires='>=3.6',
      install_requires=[
          'numpy',
          'scipy',
          'pandas',
          'calour',
      ],
      extras_require={'test': ["nose", "pep8", "flake8"],
                      'coverage': ["coverage"],
                      'doc': ["Sphinx >= 1.4"]},
      )