diff --git a/src/CommandLineParser.cpp b/src/CommandLineParser.cpp index 798249c0..5e5a5665 100644 --- a/src/CommandLineParser.cpp +++ b/src/CommandLineParser.cpp @@ -916,15 +916,15 @@ void CommandLineParser::print_help() "General options:\n" " --seed VALUE seed for pseudo-random number generator (default: current time)\n" " --pat-comp on | off alignment pattern compression (default: ON)\n" - " --tip-inner on | off tip-inner case optimization (default: ON)\n" + " --tip-inner on | off tip-inner case optimization (default: OFF)\n" " --site-repeats on | off use site repeats optimization, 10%-60% faster than tip-inner (default: ON)\n" << " --threads VALUE number of parallel threads to use (default: " << sysutil_get_cpu_cores() << ")\n" << " --simd none | sse3 | avx | avx2 vector instruction set to use (default: auto-detect).\n" - " --rate-scalers on | off use individual CLV scalers for each rate category (default: OFF)\n" - " --force disable all safety checks (please think twice!)\n" + " --rate-scalers on | off use individual CLV scalers for each rate category (default: ON for >2000 taxa)\n" + " --force [ ] disable safety checks (please think twice!)\n" "\n" "Model options:\n" - " --model +G[n]+ | FILE model specification OR partition file (default: GTR+G4)\n" + " --model +G[n]+ | FILE model specification OR partition file\n" " --brlen linked | scaled | unlinked branch length linkage between partitions (default: scaled)\n" " --blmin VALUE minimum branch length (default: 1e-6)\n" " --blmax VALUE maximum branch length (default: 100)\n" diff --git a/src/main.cpp b/src/main.cpp index 72437483..52d69dae 100644 --- a/src/main.cpp +++ b/src/main.cpp @@ -99,8 +99,7 @@ void print_banner() "Sarah Lutteropp, Ben Bettisworth." << endl; LOG_INFO << "Latest version: https://github.com/amkozlov/raxml-ng" << endl; LOG_INFO << "Questions/problems/suggestions? " - "Please visit: https://groups.google.com/forum/#!forum/raxml" << endl; - LOG_INFO << endl << "WARNING: This is a BETA release, please use at your own risk!" << endl << endl; + "Please visit: https://groups.google.com/forum/#!forum/raxml" << endl << endl; } void init_part_info(RaxmlInstance& instance) diff --git a/src/version.h b/src/version.h index 8b1a732b..a2e10098 100644 --- a/src/version.h +++ b/src/version.h @@ -1,2 +1,2 @@ -#define RAXML_VERSION "0.8.1git BETA" -#define RAXML_DATE "23.04.2019" +#define RAXML_VERSION "0.9.0" +#define RAXML_DATE "20.05.2019"