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Error in file(file, "rt") : argumento 'description' inválido #185

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franroca15 opened this issue Mar 22, 2022 · 0 comments
Open

Error in file(file, "rt") : argumento 'description' inválido #185

franroca15 opened this issue Mar 22, 2022 · 0 comments

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@franroca15
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franroca15 commented Mar 22, 2022

Can you help me with this error? please
The code is:
library(ballgown)
library(RSkittleBrewer)
library(genefilter)
library(dplyr)
library(devtools)
pheno_data = read.csv("datos.csv")
bg_chrX = ballgown(dataDir = "ballgown", samplePattern = "Phvul", pData=pheno_data)

Error:

bg_chrX = ballgown(dataDir = "ballgown", samplePattern = "Phvul", pData=pheno_data)
Tue Mar 22 14:11:06 2022
Tue Mar 22 14:11:06 2022: Reading linking tables
Error in file(file, "rt") : argumento 'description' inválido

My data is:
ids cov FPKM
1 Phvul.001G000400.v2.1 10.697531 2.117978
2 Phvul.001G000400.v2.1 0.000000 0.000000
3 Phvul.001G000400.v2.1 0.000000 0.000000
4 Phvul.001G000500.v2.1 0.695112 0.137624
5 Phvul.001G000600.v2.1 0.482437 0.095517
6 Phvul.001G000600.v2.1 0.000000 0.000000

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