From 7b01719f95b418cb63efed67da6737b5eac9007f Mon Sep 17 00:00:00 2001
From: Martin Larralde <martin.larralde@embl.de>
Date: Wed, 17 Jul 2024 22:28:08 +0200
Subject: [PATCH] Release v3.5.1

---
 CHANGELOG.md                    | 11 +++++++++--
 docs/_static/json/switcher.json |  4 ++--
 docs/guide/cli.rst              |  2 +-
 pyrodigal/_version.py           |  2 +-
 4 files changed, 13 insertions(+), 6 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index cdc64a1..9db84ca 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,10 +6,17 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyrodigal/compare/v3.5.0...HEAD
+[Unreleased]: https://github.com/althonos/pyrodigal/compare/v3.5.1...HEAD
 
 
-## [v3.5.0] - 2024-07-17
+## [v3.5.1] - 2024-07-17
+[v3.5.1]: https://github.com/althonos/pyrodigal/compare/v3.5.0...v3.5.1
+
+### Fixed
+- Outdated code in `pyrodigal.cli` breaking the CLI.
+
+
+## [v3.5.0] - 2024-07-17 - YANKED
 [v3.5.0]: https://github.com/althonos/pyrodigal/compare/v3.4.1...v3.5.0
 
 ### Added
diff --git a/docs/_static/json/switcher.json b/docs/_static/json/switcher.json
index ca0d0dc..7c48ae8 100644
--- a/docs/_static/json/switcher.json
+++ b/docs/_static/json/switcher.json
@@ -1,8 +1,8 @@
 [
     {
         "name": "v3.5 (stable)",
-        "version": "3.5.0",
-        "url": "https://pyrodigal.readthedocs.io/en/v3.5.0/"
+        "version": "3.5.1",
+        "url": "https://pyrodigal.readthedocs.io/en/v3.5.1/"
     },
     {
         "name": "v3.4",
diff --git a/docs/guide/cli.rst b/docs/guide/cli.rst
index 0ced66b..3baf87e 100644
--- a/docs/guide/cli.rst
+++ b/docs/guide/cli.rst
@@ -51,7 +51,7 @@ of Pyrodigal, such as multi-threading or smaller gene prediction:
     --max-overlap MAX_OVERLAP      The maximum number of nucleotides that can overlap between two genes on the same strand.
                                    This must be lower or equal to the minimum gene length.
     --no-stop-codon                Disables translation of stop codons into star characters (*) for complete genes.
-      --pool {thread,process}      The sort of pool to use to process genomes in parallel. Processes may be faster than
+    --pool {thread,process}        The sort of pool to use to process genomes in parallel. Processes may be faster than
                                    threads on some machines, refer to documentation. (default: thread)
 
 Piping
diff --git a/pyrodigal/_version.py b/pyrodigal/_version.py
index dcbfb52..0c11bab 100644
--- a/pyrodigal/_version.py
+++ b/pyrodigal/_version.py
@@ -1 +1 @@
-__version__ = "3.5.0"
+__version__ = "3.5.1"