From ad0da6d5d09be7e7b0d3671c3bd98507c3c13fd3 Mon Sep 17 00:00:00 2001 From: alsmith Date: Sun, 21 Apr 2024 17:25:13 +0100 Subject: [PATCH] fix left_join in deseq2.qmd.jinja to use sample_info.sample_name instead of sample_info.sample --- seqnado/workflow/config/deseq2.qmd.jinja | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/seqnado/workflow/config/deseq2.qmd.jinja b/seqnado/workflow/config/deseq2.qmd.jinja index c11a887e..4a30574c 100755 --- a/seqnado/workflow/config/deseq2.qmd.jinja +++ b/seqnado/workflow/config/deseq2.qmd.jinja @@ -485,7 +485,7 @@ top_DE_genes <- normCounts %>% values_to = "count", names_to = "sample" ) %>% - left_join(sample_info, by = "sample") %>% + left_join(sample_info, by = "sample_name") %>% mutate(gene = factor(gene, levels = unique(gene))) p <- ggplot(data = top_DE_genes, aes(x = deseq2, y = count, color = deseq2)) +