From 7610f614c8f41c0955875e8768953a948eea0371 Mon Sep 17 00:00:00 2001 From: alsmith Date: Sun, 21 Apr 2024 17:29:55 +0100 Subject: [PATCH] Fix left_join in deseq2.qmd.jinja to use sample_info.sample_name instead of sample_info.sample --- seqnado/workflow/config/deseq2.qmd.jinja | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/seqnado/workflow/config/deseq2.qmd.jinja b/seqnado/workflow/config/deseq2.qmd.jinja index 4c0f5c70..6655a7c4 100755 --- a/seqnado/workflow/config/deseq2.qmd.jinja +++ b/seqnado/workflow/config/deseq2.qmd.jinja @@ -485,7 +485,7 @@ top_DE_genes <- normCounts %>% values_to = "count", names_to = "sample" ) %>% - left_join(sample_info, by = c("sample" = "sample_name") %>% + left_join(sample_info, by = c("sample" = "sample_name")) %>% mutate(gene = factor(gene, levels = unique(gene))) p <- ggplot(data = top_DE_genes, aes(x = deseq2, y = count, color = deseq2)) +