diff --git a/tests/test_pipelines.py b/tests/test_pipelines.py index 8e43c2ff..5c3f9bec 100644 --- a/tests/test_pipelines.py +++ b/tests/test_pipelines.py @@ -325,8 +325,11 @@ def config_yaml_for_testing(config_yaml, assay): if assay == "chip": config["pileup_method"] = ["deeptools", "homer"] - config['peak_calling_method'] = ["lanceotron", "macs", "homer", "seacr"] + config['peak_calling_method'] = ["lanceotron", "macs", "homer"] config["library_complexity"] = False + elif assay == "chip-rx": + config["call_peaks"] = True + config["peak_calling_method"] = ["seacr"] with open(config_yaml, "w") as f: yaml.dump(config, f)